Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39140 352 / 3e-118 RING/U-box superfamily protein (.1.2.3.4.5) AT2G21500 321 / 3e-106 RING/U-box superfamily protein (.1.2) AT1G75400 206 / 3e-61 RING/U-box superfamily protein (.1) AT1G19680 201 / 1e-59 RING/U-box superfamily protein (.1) AT1G14180 79 / 5e-16 RING/U-box superfamily protein (.1.2) AT5G18260 74 / 2e-14 RING/U-box superfamily protein (.1) AT5G57820 41 / 0.0004 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120000 [exp] 674 / 0 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.005G231500 [exp] 296 / 3e-96 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 289 / 2e-93 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 79 / 1e-15 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 77 / 4e-15 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.006G063100 [exp] 70 / 2e-13 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.018G119600 [exp] 69 / 3e-13 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G180600 [exp] 47 / 3e-05 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017978 [exp] 444 / 4e-154 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 441 / 5e-153 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10002639 [exp] 79 / 2e-15 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10020256 [exp] 78 / 2e-15 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10008046 [exp] 71 / 7e-14 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10036764 [exp] 65 / 2e-11 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10037162 [exp] 56 / 5e-08 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G158400.6 pacid=42794676 polypeptide=Potri.004G158400.6.p locus=Potri.004G158400 ID=Potri.004G158400.6.v4.1 annot-version=v4.1 ATGGGGAGTGCTTGCTGTGTTGCTGCGAGAGATAAAAATATAGTGAGTGGACCAGGTGGTGAAATCTTGCATAGAAATATTCGGTATTCGCCAACTTGGA GCTTTAGATGGGATAATCGAGGGCGAGTAGCAGGGGAAGATACATCGATAAGTTGGTTTTCTGATGGAATTAGCAGAAATGATGGATCAGAAATTAAAAA TGAATCAACCTATACATCGGAGGATGGAAGCCCAACGGAGAGCTTCCAGAGACATACGTGGCAGAAGTCCCCAACATCTGAAGGAACCGCAGCTCATGCG AGGACTCCTGCTTCAGATCAATCCCTCCCAAGGAATATCTCAATGGACACGAGTTTGGAACAGGTGAAGGAGTCAACAGAATCCATGGCGGTTCTGAATC CATCTCCTGAGAAAATCTCTCTGTCAGTGCCCTCTACTTCATCCTTATCAACATCTCCACTTCCCCCCCAAAGTCATTTACATCCTGCCAGCCCAACAAC ATCAAGGTGGCTACAGCACTCTCCGAGACATCAGCTAACAAAGCCAGTATCTGATGTCCGAATCCCAGGATTGAGGTCATCAAAGAGCATCCCAGGTTCT GAAGAGAGGCCTCCTGTTTCTTCATGGAGCCATGAATCAACTCAGGGATGCCATGGCGAGTCTTCAGATGGCTGGTCTATGCATGCATTTTCTGAGCTCA TGGCTACTTCTAATAGAGAAAGGTGGTCTTTTGATAATGAGTGCTTGGGGTTTAATCATGAGAAGACCAGATCCAGTGGTCGAAGCTCAGCTTTTACTTC TGTTGATCTTCAAACATGTGGGATCTGCTCAAAGCTATTGACTGATAAATCTTTGTGGGGCAGCCAGAAGCTCATTGCTACTAATGAGCTCTCTGTTGTC GCAGTTTTAATTTGTGGTCACACTTATCATGCTGAGTGTTTGGAAGCTCTGACTCCTGAAATTGACAAGTATGATCCTGCATGCCCATTTTGTACCTTGG GAGAGAAGCAGGCCTTTAAGCTGTCTCAAAAAGCTTTAAAAACAGAAATGGACTTGAAGGCTAGAAACAAGAAATTGAGGAGCCGAGTGGTAGATAGTGA TCTTGATGGTGATTCGGCAATGTTTGATCGCTTTAAAGATGGTGGAAGTGAAGGAAAGGGTCCAAAGATGGGCTTAAGTTCCAGCATGAAAAGTTCCTTG GCAAAGCCTTTCTTGAGGCGGCATTTTTCATTTGCATCCAAAGCGAGTAGATCCTCTACTGAGAATCACTCAACCAGAAAGAAAGGTTTCTTCTGGACAA GATCTCTGAGGGGTTGA
AA sequence Show only first row Show all	>Potri.004G158400.6 pacid=42794676 polypeptide=Potri.004G158400.6.p locus=Potri.004G158400 ID=Potri.004G158400.6.v4.1 annot-version=v4.1 MGSACCVAARDKNIVSGPGGEILHRNIRYSPTWSFRWDNRGRVAGEDTSISWFSDGISRNDGSEIKNESTYTSEDGSPTESFQRHTWQKSPTSEGTAAHA RTPASDQSLPRNISMDTSLEQVKESTESMAVLNPSPEKISLSVPSTSSLSTSPLPPQSHLHPASPTTSRWLQHSPRHQLTKPVSDVRIPGLRSSKSIPGS EERPPVSSWSHESTQGCHGESSDGWSMHAFSELMATSNRERWSFDNECLGFNHEKTRSSGRSSAFTSVDLQTCGICSKLLTDKSLWGSQKLIATNELSVV AVLICGHTYHAECLEALTPEIDKYDPACPFCTLGEKQAFKLSQKALKTEMDLKARNKKLRSRVVDSDLDGDSAMFDRFKDGGSEGKGPKMGLSSSMKSSL AKPFLRRHFSFASKASRSSTENHSTRKKGFFWTRSLRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	0	1
AT4G38040			Exostosin family protein (.1)		Potri.008G060500 [exp]	3.74	0.7143
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	4.24	0.7160
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	7.74	0.6127
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	8.94	0.6530	Pt-NHX2.2
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	11.61	0.6550
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	13.85	0.6189
					Potri.009G086900 [exp]	14.07	0.6626
AT5G01960			RING/U-box superfamily protein...		Potri.016G141200 [exp]	14.83	0.6308
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	16.00	0.6410
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	17.49	0.6390

Compare expression of checked genes

Potri.004G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.