Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39110 1199 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 1178 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 917 / 0 Protein kinase superfamily protein (.1) AT5G54380 773 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 733 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 704 / 0 Protein kinase superfamily protein (.1) AT5G24010 668 / 0 Protein kinase superfamily protein (.1) AT3G51550 615 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 605 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G04690 591 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120400 [exp] 1584 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.015G061700 [exp] 914 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.001G405500 [exp] 795 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 791 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 754 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 748 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 684 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 655 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.010G213200 [exp] 635 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017478 [exp] 1130 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 838 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 830 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 769 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 712 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 710 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 625 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 625 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10016907 [exp] 593 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 592 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G158700.1 pacid=42796432 polypeptide=Potri.004G158700.1.p locus=Potri.004G158700 ID=Potri.004G158700.1.v4.1 annot-version=v4.1 ATGGAAAAAAATAAATTAAAAACATCAAAAATCAATCTTGTTCTGCCTTCCTTGTTGTCTCCGATAATGGCTTTCCTCCTTGCTCTCCTCTTTGCCTTGC TTTCTAGCCCCAGCATTGTATCCGCGGGTGGCAATGCCTTCAAGCCAGCTGATGAGTTCCTCATCAACTGTGGAGCCAAGAACCTGGCTTCTTTTCCTGA TGGAAGAATCTTCAAGACCGACAAGGAGGCCCAAGGTTACTTACAGACCAAGCAAGATATCTTAGTATCTATTCCGTCCGCCAATGTTTCTTCTCCTCTA TATCTGTCAGCGAGGATTTTTAAAGAGGATGCGACTTATGCATTTACATTGAAGAGTGCGGGGTGGCATTGGGTGCGTCTGCATTTATTTCCAATGAATA ACACAGAATTCGATCTGCGCACAGCAACCTTCTCTGTCAACACAGATAAGTATGCCCTCCTTCACAACTTCAATACGAATAACGATACTCAAGCTGTATT GAAGGAGTATCTAATTAACATGACCGACCCAAACTTTTCCATCCACTTTATACCTCTGAAGAATTCTGCAGCTTTCATCAATGCCATTGAGGTTGTTTCA GCTCCTGACATTCTGATATCTGATCAAGCCACCAACCTCTTCCCCGTTAACAACTTTGCTGGTTTGAACAACTTTGGGTACGAAGTAGTGTACAGGCTCA ACATGGGGGGACCTTTGATCACCTCAGAAAATGACACACTTTGGAGGAGATGGGTACCCGATAAGCCATACCTTAAGCACGAAGCCTTGGCCAAAAGTGC ATCTGTCCCTACTTCCTCCATCAAATATGGTCCAGGAATCTCATCACTTATTGCGCCAGCAACGGTCTATGCATCTGCTGAGCAAATGGCTGATTCAGAA ACGAGGATTCAAAATTTCAATTTAACATGGAATTTTGTGGCTGATGCAACATTCAGCTACGTTGTTCGGCTGCATTTTTGTGACATTGTGAGCAAATCCC TTAATGATCTCTACTTTAATGTGTATCTTAATGGGAAAATGGCAATTTCTGGATTGGATTTGTCATCCATCAAAGACGAATTGGCAGTATCATATTTCAA AGACTTTGTGGTGGATGCTTCCTTGATGTCCAATGGACTCGCAGTTGAGGTTGGTCCTATGGGTGACGAAACTGGTACGAGAAATGCTATTCTGAATGGC TTGGAGGTCTTCAAAATGAGCAGTAAAGTTAACAGTTTGGATGGAGTGTTTGGGGTTGATGGTAAGATGCTTGAGAATCACAAGGCAGTTGTTTACGTAG GATTCGGGTTGATGTTTGGTGCATTTGTTGGCCTTGGTGCAATGCTGTTGAAGTGGCACAAGAGACCTCAAGATTGGCAAAAGAGGAATAGCTTTTCTTC TTGGTTGCTTCCTGTCCATGCTGGTGACCATAGCTTCATGTCAAGTAAAACCTCACTGGGATCTCACAAGACCAACTTTTACTCATCAACTCTTGGTCTA GGCCGGTTTTTCTCTCTATCAGAGTTGCAGGAGGCTACCAAGAACTTCGATTCAAGCGAAATAATTGGTGTTGGTGGTTTTGGCAATGTCTATATTGGAA TGATTGATGATAGTACCAAAGTTGCTGTCAAGAGAGGTAACCCACAATCTGAACAAGGAATCACAGAGTTCCAGACAGAAATTCAGATGTTATCAAAGCT CAGGCATAGGCATTTGGTGTCCTTGATTGGCTATTGTGACGAGAACGACGAAATGATCCTGGTTTATGAATACATGTCCAATGGACCTTTTAGGGACCAC CTCTATGGAAAGAATTTGCCCACATTGTCATGGAAGCAAAGGCTGGAGATCTCTATTGGATCTGCTCGCGGACTTCATTACTTGCATACGGGAACTGCAC AAGGTATCATTCACCGTGATGTGAAGACCACAAACATTTTGCTCGACGATGCCTTTGTCGCCAAGGTTGCTGATTTTGGGCTGTCCAAAGATGCGCCTAT GGGACAGGGTTATGTCAGTACTGCAGTGAAGGGAAGTTTTGGATACTTGGATCCTGAGTACTTCAGGAGGCAGCAACTGACTGATAAATCTGACGTGTAC TCATTTGGGGTGGTGCTGCTTGAGGTATTGTGTGCAAGGCCTGCCCTTAACCCTCAACTTCCAAGAGAGCAAGTTAATTTGGCTGAATGGGCAATGCAAT GGAAGAGGAAGGGGTTGCTTGAAAAGATCATCGACCCTTGTCTTGTTGGTACCATCAATCCTGAATCATTGATGAAGTTTGCCGAGGCTGCAGAGAAGTG CTTGGCTGAGCATGGTGTTGACAGGCCAACTATGGGAGATGTGCTGTGGAACTTGGAGTATGCTTTGCAGCTCCAAGAAGCTTTCTCTAAAGGAAAAGCT GAAGATGAAAGTAAGTTATCAGCTGCCGTAGCCGACTCCCCTGTTGCTGTAGCTACTCCCAAAGCTATTTCCACCTCTGTCACGGAAGACAACAAAAGCC CTGCTGAAGTTCAGGTCATTGATGATCATTCAGGAACGGCAATGTTTTCTCAATTTGCTGGGCTAAACGGCAGGTAA
AA sequence Show only first row Show all	>Potri.004G158700.1 pacid=42796432 polypeptide=Potri.004G158700.1.p locus=Potri.004G158700 ID=Potri.004G158700.1.v4.1 annot-version=v4.1 MEKNKLKTSKINLVLPSLLSPIMAFLLALLFALLSSPSIVSAGGNAFKPADEFLINCGAKNLASFPDGRIFKTDKEAQGYLQTKQDILVSIPSANVSSPL YLSARIFKEDATYAFTLKSAGWHWVRLHLFPMNNTEFDLRTATFSVNTDKYALLHNFNTNNDTQAVLKEYLINMTDPNFSIHFIPLKNSAAFINAIEVVS APDILISDQATNLFPVNNFAGLNNFGYEVVYRLNMGGPLITSENDTLWRRWVPDKPYLKHEALAKSASVPTSSIKYGPGISSLIAPATVYASAEQMADSE TRIQNFNLTWNFVADATFSYVVRLHFCDIVSKSLNDLYFNVYLNGKMAISGLDLSSIKDELAVSYFKDFVVDASLMSNGLAVEVGPMGDETGTRNAILNG LEVFKMSSKVNSLDGVFGVDGKMLENHKAVVYVGFGLMFGAFVGLGAMLLKWHKRPQDWQKRNSFSSWLLPVHAGDHSFMSSKTSLGSHKTNFYSSTLGL GRFFSLSELQEATKNFDSSEIIGVGGFGNVYIGMIDDSTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMSNGPFRDH LYGKNLPTLSWKQRLEISIGSARGLHYLHTGTAQGIIHRDVKTTNILLDDAFVAKVADFGLSKDAPMGQGYVSTAVKGSFGYLDPEYFRRQQLTDKSDVY SFGVVLLEVLCARPALNPQLPREQVNLAEWAMQWKRKGLLEKIIDPCLVGTINPESLMKFAEAAEKCLAEHGVDRPTMGDVLWNLEYALQLQEAFSKGKA EDESKLSAAVADSPVAVATPKAISTSVTEDNKSPAEVQVIDDHSGTAMFSQFAGLNGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39110			Malectin/receptor-like protein...		Potri.004G158700 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.004G147600 [exp]	11.83	0.9310
AT5G57480			P-loop containing nucleoside t...		Potri.006G169000 [exp]	20.97	0.8851
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.003G038500 [exp]	28.70	0.9191	BGAL1.2
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127700 [exp]	33.58	0.9174
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	33.98	0.9180
AT1G25375			Metallo-hydrolase/oxidoreducta...		Potri.010G122100 [exp]	48.57	0.9139
					Potri.008G169450 [exp]	67.15	0.9017
AT4G30130			Protein of unknown function (D...		Potri.001G065345 [exp]	69.13	0.9096
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Potri.001G058900 [exp]	70.53	0.9077
AT3G16660			Pollen Ole e 1 allergen and ex...		Potri.010G012400 [exp]	72.00	0.9112

Compare expression of checked genes

Potri.004G158700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.