Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SAE2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21470 896 / 0 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 149 / 1e-38 ECR1 E1 C-terminal related 1 (.1) AT5G06460 122 / 1e-28 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 117 / 6e-27 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 86 / 2e-17 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 68 / 7e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G32410 60 / 3e-09 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 57 / 3e-08 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120200 [exp] 1122 / 0 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.010G031900 [exp] 154 / 1e-40 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 154 / 1e-40 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.009G075700 [exp] 129 / 1e-30 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 125 / 1e-29 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 125 / 2e-29 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 91 / 4e-19 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 64 / 2e-10 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G229100 [exp] 60 / 3e-09 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017479 [exp] 949 / 0 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 912 / 0 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 152 / 1e-39 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 151 / 1e-39 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10012507 [exp] 130 / 6e-31 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 119 / 2e-27 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 118 / 3e-27 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10000697 [exp] 92 / 2e-19 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 91 / 4e-19 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10031562 [exp] 59 / 7e-09 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF10585 [poplar] [flax] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [poplar] [flax] PF14732 [poplar] [flax] UAE_UbL Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G158900.1 pacid=42795548 polypeptide=Potri.004G158900.1.p locus=Potri.004G158900 ID=Potri.004G158900.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTCAACACTCACAAGCAATAAAGGGTGCGAAAGTGCTTATGGTTGGAGCAGGTGGGATTGGTTGTGAGTTACTTAAGACTCTTGCTCTTT CCGACTTCCAAGATATTCATATAATTGACATGGACACTATAGAAGTCAGCAACCTCAATAGGCAATTTTTGTTCCGTCAATCACATGTTGGACAGTCTAA AGCAAAGGTTGCTCGCGATGCTGTGTTAAGATTTAGGCCTCACATAAACATTACCCCTTACCATGCAAATGCGAAGGATTCTAACTTCAATGTTGACTTC TTCAAGCAATTTAATGTCGTTCTGAATGGACTAGATAACTTAGATGCAAGGCGACATGTGAACCGCCTTTGCTTGGCTGCTGAAGTTCCTCTGGTTGAAA GTGGAACTACTGGGTTCCTAGGACAGGTTACAGTGCATGTGAAGGGAAAAACAGAGTGCTACGAGTGTCAACCTAAACCTGCCCCAAAGACTTATCCTGT CTGCACAATTACTAGTACTCCATCAAAGTTTGTTCACTGTGTTGTTTGGGCGAAGGACCTGCTTTTTGCAAAATTATTTGGAGACAAGAATCAGGATAAT GATTTAAATGTGCGTTCTAATGATGCTGCTAGGTCACCTGAACACGCAGGTGATGCATTTGAATGGAGTGGAAATGAAGACCTAGAGCAATATGGAAGAG GAATATATGATCATGTTTTTGGCTATAACATTGAACGAGCTTTGTCTAATGAAGAGACATGGAAAAATCGTAATAAGCCAAGGCCCATCTATTGTAGGGA TGTCCTGCCTGACAGAATGACCCAACAGAATGGAAATGTTGATAAAACTGATGATCTTTCATCGGCATCAGCCATGGCATCTTTGGGCCTAAAGAATCCA CAGGACATATGGTGCCTAATGGAAAATACAAAAGTTTTTCTTGAGGCGTTGAAGCTATTTTTTACTAACAGAAGAAAGGAGATTGGGAACCTGAGTTTTG ACAAAGATGATCAGCTAGCAGTGGAATTTGTAACAGCTGCTGCAAATATTCGGGCTGCTTCATTTAACATTCCTTTGCACAGCCTTTTTGAAGCTAAAGG TATTGCTGGCAATATTGTACATGCTGTTGCCACAACAAATGCTATTGTAGCTGGTTTAATTGTCATTGAAGCAATCAAGGTGTTGAAAAAGGATACTGAA AGTTACAGGATGACATATTGTCTAGAACATCCATCTAAAAAGATGCTTCTTATGCCAGTGGAACCTTTTGAACCGAACAAGTCCTGCTGTGTTTGTTCTA AGACACCACTGTCACTAGAGATCAATACTCATCGCTCAAAGCTGCGGGATTTTGTTGAGAAGATAGTTAAAGCCAAGCTTGGTATGAACTCCCCACTGAT TATGCATGCCACAGCCCTTCTTTATGAAGTTGGCGATGATCTTGAAGAAAACGAGATAGCAAATTATACGGCAAACCTTGAAAAGGTACTATCTGAGCTT CCTCCTCCAGTCATTGATGGAACAGTGCTCACAGTAGAGGATCTTCAACAGGAGTTCACATGCAATATCCATATCAAGCATAGAGAAGAATTTGATGAAG AGAAAGAACCTGATGGAATGGTTCTTTCAGGATGGACACAAGCTCCTCCTGAGAAGAAGGATGGCAAAACATCTATTGGAAATGGTGCAAGTACATCAAA ATCATTACCAACAAAACTGGGGATCACCGAGATAGATAATGAGGTCAAAGAAATTTCAGATGGGACTGTGAGTCCAGGAATGAAGAGAAAACTATCAGAG TTTTCTGATGGCAGCACTGTGGATCAGTCAAGTGATGTTGATGAAACTAGGAATAACAAGAAAACCCAAAAGCATGATGATGACGATGACCTTGACCTTG TTATGCTTGATCACTGGGATAGCAACATGAGCGAGAAGCAAAGATCGCCATAG
AA sequence Show only first row Show all	>Potri.004G158900.1 pacid=42795548 polypeptide=Potri.004G158900.1.p locus=Potri.004G158900 ID=Potri.004G158900.1.v4.1 annot-version=v4.1 MASLQHSQAIKGAKVLMVGAGGIGCELLKTLALSDFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPHINITPYHANAKDSNFNVDF FKQFNVVLNGLDNLDARRHVNRLCLAAEVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCVVWAKDLLFAKLFGDKNQDN DLNVRSNDAARSPEHAGDAFEWSGNEDLEQYGRGIYDHVFGYNIERALSNEETWKNRNKPRPIYCRDVLPDRMTQQNGNVDKTDDLSSASAMASLGLKNP QDIWCLMENTKVFLEALKLFFTNRRKEIGNLSFDKDDQLAVEFVTAAANIRAASFNIPLHSLFEAKGIAGNIVHAVATTNAIVAGLIVIEAIKVLKKDTE SYRMTYCLEHPSKKMLLMPVEPFEPNKSCCVCSKTPLSLEINTHRSKLRDFVEKIVKAKLGMNSPLIMHATALLYEVGDDLEENEIANYTANLEKVLSEL PPPVIDGTVLTVEDLQQEFTCNIHIKHREEFDEEKEPDGMVLSGWTQAPPEKKDGKTSIGNGASTSKSLPTKLGITEIDNEVKEISDGTVSPGMKRKLSE FSDGSTVDQSSDVDETRNNKKTQKHDDDDDLDLVMLDHWDSNMSEKQRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.004G158900 [exp]	0	1	Pt-SAE2.1
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	1.73	0.8274
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	6.92	0.7953
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	11.91	0.8056
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Potri.009G168300 [exp]	12.24	0.7841	Pt-GLUR2.1
AT1G28530			unknown protein		Potri.004G051000 [exp]	18.76	0.7723
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	23.74	0.7885
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.006G099800 [exp]	24.89	0.7478
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.009G126200 [exp]	24.97	0.7358	Pt-GAS41.2
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	31.93	0.7512
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.017G144800 [exp]	37.82	0.7277

Compare expression of checked genes

Potri.004G158900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.