Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16390 812 / 0 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 677 / 0 CHR34 chromatin remodeling 34 (.1) AT1G05490 206 / 1e-54 CHR31 chromatin remodeling 31 (.1) AT3G24340 199 / 2e-52 CHR40 chromatin remodeling 40 (.1) AT3G32330 177 / 4e-49 DNA repair protein-related (.1) AT3G42670 180 / 4e-46 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G20420 179 / 7e-46 CHR42 chromatin remodeling 42 (.1) AT3G32280 136 / 9e-34 ATP-dependent helicase family protein (.1) AT3G31900 117 / 6e-28 ATP-dependent helicase family protein (.1) AT1G08600 95 / 2e-19 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120700 [exp] 1155 / 0 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.014G050200 [exp] 221 / 2e-59 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 220 / 5e-59 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.004G159100 [exp] 127 / 2e-33 AT2G16390 210 / 1e-63 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 120 / 9e-29 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.001G123400 [exp] 98 / 2e-20 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 97 / 4e-20 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.013G048500 [exp] 97 / 5e-20 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 96 / 9e-20 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041963 [exp] 964 / 0 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 939 / 0 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 778 / 0 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10003003 [exp] 235 / 3e-64 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 214 / 3e-57 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10040956 [exp] 200 / 1e-52 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 194 / 9e-51 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040136 [exp] 124 / 1e-28 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10001090 [exp] 94 / 7e-21 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10032785 [exp] 95 / 2e-19 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G159000.2 pacid=42796734 polypeptide=Potri.004G159000.2.p locus=Potri.004G159000 ID=Potri.004G159000.2.v4.1 annot-version=v4.1 ATGAAAGATACGAAGGAAAAAGTAACTGATTACGCCAAGCCATTTGCAATTCGTGGTTTACTGGAGCGGTTAGATAGTGGGAGATATGGAAGTGTTACGG ACGATATCCGATCACTTTTTTACCGGAGAGCTCAATTGATACATCCGTGTTTGGCTATGCATCCTACGCTGTCGAATGAGCCACGTGGTCGAGGGATGAG TTTCGGTGAGGGAAAGTGTAATGTGACTGATTTGGATGATGATGAGATTGAGGGTGGTGGTGATTCTGTTGGAAATGTTGTTGTGGGGAGAACGCCGGTT GTGGTTATTGACTCGGACGATGATGAGAGTAATGAGAATAGGATGGTTGGGCATTTTCAGGGGATTGTTTTGCCTAAGCCTGAGGGGCAATTTTCCACTG ACGTTATGGTTAGTGACAATGTTGGTAGAAGAATTCAAGGAGAAGTAGCGAGCCTTACTGGTGAACCTGACTCCAAGAAAGATAAAGGTGTTTATGTTGG TGTAGAGGACGATGAAGTTGACACGGAGATCAAAGATGATGGTCTTCAGGTTAGTGACAATGTTGGTAGAAGAATTCAAGGAGAAGTAGCGAGCCGTACT GGTGAACCTGACTCCAAGAAAGATAAAGGTGTTTATGTTGGTGTAGAGGACGATGAAGTTGACACGGAGATCAAAGATGATGGTCTTCAGGTTAGTGACA ATGTTGGTAGAAGAATTCAAGGAGAAGCAGCGAGCCTTGCTGGTGAACCTGACTCCAAGAAAGATAACGGTGTTTATGTTGGTGTAGAGGACGATGAAGT TGACACGGAGATCAAATATGATGGTCTAGGAGATATCTGGAAAGAAATGTCATTTGCATTGGAATGTTCCAAGGATGTTGTTGAAAATTCTCCATCTGAT GAAAACATGGAAGAAGATGAAGATTATTGTGATCACTCTTTTGTCTTGAAGGATGATATTGGTTATGTTTGTCGCATATGTGGGGTTATTGAGAGAGCAA TTTATACTATAATTGAAATCCAGTTTAATAAGGTCAAAAGGAATACAAGGACTTACATCTCTGAATCCCGGAATGCCAAGGACAGAGATTCAAATGGGAC GGTTGGAGCTGACTTGTTTGAAGAAGATTTGATGGTAACTGACATCCCTGCTCATCCAAGGCACATGAAGCAAATGAAACCTCATCAAGTGGAGGGTTTC AATTTTCTTCGCAATAATTTGGTGGCAGATAATCCAGGGGGGTGCACCTGGCTCATGCTCCGGGATCCGATATGGCAAATCGAGGATATTCCACTGTATG ATTTCTACTCTGTTAAAGCAGATAGTAGGCGGCAACAATTGGAGGTCTTGAACCAGTGGGTGGAGCAGAAGAGTATACTTTTCTTAGGGTACAAACAGTT CTCCTCTATTGTATGTGATGATGGGAAGAACCAAGTGTCAGTTACTTGCCAGGAGATATTGCTAAGAAGACCTTCAATTCTAATTTTGGATGAAGGCCAT ACTCCGAGGAATGAGAATACAGACGTGTTACAATCTCTAGCCAAAGTGCAGACACCTCGTAAAGTTGTGCTGTCTGGAACCCTCTACCAAAATCATGCCA AGGAGGTGTTCAATGTATTGAATCTAGTTCGTCCGAAGTTCTTGAGGATGGATACCTCCCGAGCTATTGTCAAGCGCATCTTGAGTAAAGTAAACATTCC AGGTGCAAGGAAGCAATTCAAAGCAGGTGCAGGTGCAGCTTTCTATGACTTGGTAGAGCAAACCATACAGAAAGACCAAGATTTCAAAAGGAAGGTGACT GTTATACGAGATCTGCGTGAGATGACTAGCAAGGTTCTTCATTATTATAAAGGAGATTTCTTGGATGAGCTTCCAGGGCTAGTTGATTTCACTTTGATGC TGAACCTCAGTTCCAGACAGAAGCACGAGGTGAAAAAGTTGAAGAAGTTGGCAATGAAGTTCAAGAGAAGTTCTGTTGGGAGTGCTGTTTATCTACACCC AAAGTTGAACTCCTTCTCCGAGAACTCTGCCATAACTGATGATATGATGGATGACTTGCTAGAGACAGTAGATGTGAGAGATGGAGTCAAGGCGAAATTC TTTCTCAATATATTAAGCTTATGCGAGTCAGCTGGGGAGAAGCTCCTGGTTTTCAGCCAGTACCTCACACCGTTGAAGTTTTTAGAAAGACTTGTGATAA AAGTAAAGGGCTGGATTTTAGGAAAAGAAATCTTTGTGATCTCTGGCGAGTCAAGTTCTGATCATCGGGAGTGGTCCATGGAGCGTTTCAACAACTCCAC GGATGCTAAAGTATTCTTTGGGTCCATTAAGGCATGTGGAGAAGGGATATCACTGGTGGGAGCATCTCGGATAATTATCCTAGATGTTCACCTTAATCCT TCAGTAACTTGCCAGGCGATAGGACGTGCATTCCGACCTGGGCAAACAAAGAAAGTGTATGCATATAGGTTGGTCGCTGCTGATTCACCTGAAGAGGAAG ATCATACCACTTGCTTCAGGAAGGAAGCAATCGCAAAAATGTGGTTTGAATGGAATGAATACTGTGGTTACCAGGATTTTGAGGTGGGGACTGTTGAGTT GGATGACAGTGGAGATCGCTTCTTGGAAAGTCTGCTGGTGAGGGAAGATGTAAGGGTTTTGTATAAAAGGTCAGTGCACATTGGTAACTCTGTTAATTTT CCATGA
AA sequence Show only first row Show all	>Potri.004G159000.2 pacid=42796734 polypeptide=Potri.004G159000.2.p locus=Potri.004G159000 ID=Potri.004G159000.2.v4.1 annot-version=v4.1 MKDTKEKVTDYAKPFAIRGLLERLDSGRYGSVTDDIRSLFYRRAQLIHPCLAMHPTLSNEPRGRGMSFGEGKCNVTDLDDDEIEGGGDSVGNVVVGRTPV VVIDSDDDESNENRMVGHFQGIVLPKPEGQFSTDVMVSDNVGRRIQGEVASLTGEPDSKKDKGVYVGVEDDEVDTEIKDDGLQVSDNVGRRIQGEVASRT GEPDSKKDKGVYVGVEDDEVDTEIKDDGLQVSDNVGRRIQGEAASLAGEPDSKKDNGVYVGVEDDEVDTEIKYDGLGDIWKEMSFALECSKDVVENSPSD ENMEEDEDYCDHSFVLKDDIGYVCRICGVIERAIYTIIEIQFNKVKRNTRTYISESRNAKDRDSNGTVGADLFEEDLMVTDIPAHPRHMKQMKPHQVEGF NFLRNNLVADNPGGCTWLMLRDPIWQIEDIPLYDFYSVKADSRRQQLEVLNQWVEQKSILFLGYKQFSSIVCDDGKNQVSVTCQEILLRRPSILILDEGH TPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHAKEVFNVLNLVRPKFLRMDTSRAIVKRILSKVNIPGARKQFKAGAGAAFYDLVEQTIQKDQDFKRKVT VIRDLREMTSKVLHYYKGDFLDELPGLVDFTLMLNLSSRQKHEVKKLKKLAMKFKRSSVGSAVYLHPKLNSFSENSAITDDMMDDLLETVDVRDGVKAKF FLNILSLCESAGEKLLVFSQYLTPLKFLERLVIKVKGWILGKEIFVISGESSSDHREWSMERFNNSTDAKVFFGSIKACGEGISLVGASRIIILDVHLNP SVTCQAIGRAFRPGQTKKVYAYRLVAADSPEEEDHTTCFRKEAIAKMWFEWNEYCGYQDFEVGTVELDDSGDRFLESLLVREDVRVLYKRSVHIGNSVNF P

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	0	1
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	1.00	0.9178
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	2.44	0.8942
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	3.87	0.8820
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	4.24	0.8507
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.010G141501 [exp]	8.71	0.8359
AT5G05800			unknown protein		Potri.001G195601 [exp]	9.79	0.8748
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	11.95	0.8470
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	12.24	0.7882
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	12.72	0.8424
AT1G48560			unknown protein		Potri.003G188600 [exp]	15.49	0.7648

Compare expression of checked genes

Potri.004G159000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.