Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16390 210 / 1e-63 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 196 / 9e-59 CHR34 chromatin remodeling 34 (.1) AT3G32330 94 / 5e-23 DNA repair protein-related (.1) AT3G32280 94 / 1e-22 ATP-dependent helicase family protein (.1) AT3G42670 91 / 3e-21 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G20420 89 / 2e-20 CHR42 chromatin remodeling 42 (.1) AT1G05490 84 / 6e-19 CHR31 chromatin remodeling 31 (.1) AT1G08600 74 / 2e-15 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G31900 72 / 6e-15 ATP-dependent helicase family protein (.1) AT3G24340 69 / 6e-14 CHR40 chromatin remodeling 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120700 [exp] 217 / 3e-66 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 127 / 3e-34 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.008G073500 [exp] 90 / 6e-21 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.010G183832 [exp] 82 / 2e-18 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.013G048500 [exp] 78 / 7e-17 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.014G050200 [exp] 77 / 2e-16 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.019G021500 [exp] 74 / 2e-15 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G141500 [exp] 48 / 1e-06 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.009G047800 [exp] 43 / 7e-05 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041963 [exp] 230 / 2e-70 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 227 / 2e-69 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 209 / 2e-62 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10040956 [exp] 89 / 2e-20 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 87 / 9e-20 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10003003 [exp] 79 / 4e-17 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 77 / 2e-16 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10003572 [exp] 73 / 5e-15 AT1G08600 1560 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10040136 [exp] 70 / 4e-14 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10032785 [exp] 70 / 6e-14 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G159100.2 pacid=42794339 polypeptide=Potri.004G159100.2.p locus=Potri.004G159100 ID=Potri.004G159100.2.v4.1 annot-version=v4.1 ATGGTTATGTTTGTCGCATTTGTGGAATTATTCATAGGAGCATTTGTGGAATTATGTTTGTCGCATTTGAAAGGATCTTATGCTCGTGAGCCTAAAAATA TCCAAGACAGAGAGCCTGCTGATCTTACTCCATTTGGTGCTAAACTTCCTGGAAATAAGTTGATGGAGACTGAAATTTCTGCTCATCCGAAGCATAGGAA AAAAATGAAAGCCCATCAAGTGGAGGTCTTTAAGTTTCTCTGCAGCAATCTCTTGGCTGATGATCCAGGGGGCTGCATTTTAGCCCATGCTCCAGGTTCA GGGAAGACATTCATCGTCATCAGCTTTATAAAAAGCTTCCTAGCCAAGAATCCTGATGGCAGACCACTAGTCGTAATGCCTAAAGGAATCTTAGATACCT GGAAGAAGGAATTTGCGACATGGCAAGTTGAGGATATCCCGTTAATTGATTTTTACTCATCAAAAGCAGATAAACGGTCTCGGCAACTGGATGTTTTGGA ACAATGGGTAAAACAAAGGAGCATCTTGTTTTTAGGTTATAAGCAGTTCTCCGTCATAGTTTCTGAAGTTTAA
AA sequence Show only first row Show all	>Potri.004G159100.2 pacid=42794339 polypeptide=Potri.004G159100.2.p locus=Potri.004G159100 ID=Potri.004G159100.2.v4.1 annot-version=v4.1 MVMFVAFVELFIGAFVELCLSHLKGSYAREPKNIQDREPADLTPFGAKLPGNKLMETEISAHPKHRKKMKAHQVEVFKFLCSNLLADDPGGCILAHAPGS GKTFIVISFIKSFLAKNPDGRPLVVMPKGILDTWKKEFATWQVEDIPLIDFYSSKADKRSRQLDVLEQWVKQRSILFLGYKQFSVIVSEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159100 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.018G011400 [exp]	1.73	0.8610
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.005G060900 [exp]	8.12	0.7503
AT1G71910			unknown protein		Potri.019G084500 [exp]	10.09	0.8144
AT4G24480			Protein kinase superfamily pro...		Potri.002G111200 [exp]	10.48	0.7856
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437100 [exp]	21.09	0.8197
AT1G52565			unknown protein		Potri.006G069100 [exp]	44.98	0.6874
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.001G235300 [exp]	49.23	0.7323
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Potri.009G013900 [exp]	51.37	0.7994
AT1G01490			Heavy metal transport/detoxifi...		Potri.003G132200 [exp]	70.95	0.7920
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	91.03	0.6953

Compare expression of checked genes

Potri.004G159100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.