Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16400 414 / 1e-138 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 416 / 2e-138 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G75410 311 / 3e-98 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 308 / 1e-96 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G35940 284 / 5e-86 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G36870 256 / 5e-75 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 253 / 8e-75 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G27220 233 / 1e-69 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT5G41410 236 / 5e-69 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT1G75430 216 / 4e-65 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120800 [exp] 1134 / 0 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 448 / 4e-149 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.006G203000 [exp] 328 / 1e-102 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 323 / 8e-101 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 319 / 7e-99 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 315 / 2e-97 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.003G131300 [exp] 275 / 5e-83 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 268 / 3e-80 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.005G129500 [exp] 270 / 1e-79 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000184 [exp] 785 / 0 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 782 / 0 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 741 / 0 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 324 / 3e-101 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 311 / 4e-96 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10010633 [exp] 296 / 1e-91 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10033192 [exp] 281 / 8e-86 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10013579 [exp] 279 / 2e-85 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 240 / 6e-72 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 239 / 1e-68 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.004G159300.1 pacid=42795974 polypeptide=Potri.004G159300.1.p locus=Potri.004G159300 ID=Potri.004G159300.1.v4.1 annot-version=v4.1 ATGGCTACCTATTATACTAGTTCAAATAATCAAAGAGATGGTGCTGCAATGGTATATCTGCCTGGTTCATATCCAGAGGCGCCAGTTCTTCCTGGCAATA TGATGATGTACATGAATTCTGGATCATACTCGGACAATTTGGCTGGGAATTCTCACCAGCAAAACAACTGTATTGAATTTCAGTCCGTGGAGAATTCTGA TTCAACCCCACAGCAACAAGAAATCCTGTCAAATCTGGGTGGATCACGAATAGGGGAGCATGGTTTTGGTGCATGGAGGGATGGTAGAAATGAGATGCTA GTCATGCATTCAGTGAGTGGTGCTTCCAGCGTTCTTCATGGGGCACAGAGCTTGCAGGGCCAGGGTTTATCTCTCAGTCTTGGCACCCAAATCCAATCTG GAATTCAAATGCCCTCGATTTCCTACCGGAATACCAATCCAGGCCTTACTTCGTTCTTGAGTCCTAATTCTTCAATTACAGGTGATGGTGGTGGCAGGAA TGGCTCTTCCAGGGATGACCAGTCAAGAAATATTGATTATTTGACACCTGGTTTTTCTGGGGGTAATCACGATATGAATAAAGGTGATTTATCTCCATAT GGAATGAATAGCATTGCAAGAACAATTCCCAATTCCAAGTACCTGAAGGCAGCACAACAACTACTTGATGAAGTTGTCAATGTTCGAAAAGCGATAAAGC AACCTGATAAAGAGAAAAACCAGACCACAAGTGAACATGGACTGAACAGTGCAAAGGATGGTGATAGTGGATCAAAGAATGGTGCTTCAAACCTTCAAGA ATCCACCAACTCGCCAAGTGAGCTTTCACATGCTGAAAGACAAGAATTACAGAACAAGTTGACAAAGCTTTTATCCATGCTAGACGAGGTTGATAGACGA TACAAACAGTATTATCATCAGATGCAAATTGTGGTGTCCTCATTTGATGTGATATCAGGATGTGGAGCAGCTAAACCATACACAGCGCTTGCCCTCCAGA CTATTTCCCGTCACTTTCGGTGCTTGCGTGATGCAATAACTGGCCAAATTCATGCAACCCGTAAAAGCCTCGGGGAACAAGAAACTTCAGAAAACAGTAA AGGAGTTGGAATTACACGACTCCGGTATGTGGACCAGCACCTTAGACAACAGAGGGCTCTTCATCAACTTGGTATGATGCAACAGCATGCGTGGAGGCCA CAAAGGGGTCTGCCTGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGAGCATTTTCTCCACCCTTATCCAAAGGATTCTGATAAGATCATGCTGG CAAGGCAGACAGGCTTGACTAGAAGTCAGGTATCAAACTGGTTCATTAATGCACGAGTGCGTCTCTGGAAGCCCATGGTTGAAGAGATGTACAAAGAAGA GCTTGGTGATGCAGAGATGGACTCTAATTCTTCTTCTGAAAATGCAGCCAAAGCAACAAAAGGTGATATGGGAACCTCTGAAGACAGAGGGGAAGAATTC CAACAAAGTGCTAGTTCCACAGCCACTGAAAGATGCAGTGCAGGACAGTTGATGGATCCCAAATCTGACCACGTTCCTGATATGGAAATGGCAGGATCAA CGACAAGAAGCAACTTCCAAAATGGCACACGTGGTGAGGCTTTTACTGAGTATGGCTTGCTAAAGCTGAGGGAGGACCAAAGGCCTAGTATGGATGACTG TGGTCTCTTCTCTGATGCTATGGCTCACTCCGAGGGGGGTGGTGATAGGTTTATGGCGGCTGCTGCCGCTGCGTACCAAATGTCTGAGGTGGGAAGGTTT GGAAATGGAAGTGGGGTGTCTCTTACATTGGGTTTGCAGCACTGCGAGGGTGGCAACCTTCCAATGCCAGGCACAACTCATCATGGTTTTGTTTCCATGA GAGGGGATGATGATATCTACAATGCAGCATCTTCGGTGGGGGCTGGGGCCACAGATTTTGAGTGCTTAAATCCTGGGAACAGGCAGCACAGGTTCAGTTC CTCCCACGTATTTCATGATTTCGTAGCTTGA
AA sequence Show only first row Show all	>Potri.004G159300.1 pacid=42795974 polypeptide=Potri.004G159300.1.p locus=Potri.004G159300 ID=Potri.004G159300.1.v4.1 annot-version=v4.1 MATYYTSSNNQRDGAAMVYLPGSYPEAPVLPGNMMMYMNSGSYSDNLAGNSHQQNNCIEFQSVENSDSTPQQQEILSNLGGSRIGEHGFGAWRDGRNEML VMHSVSGASSVLHGAQSLQGQGLSLSLGTQIQSGIQMPSISYRNTNPGLTSFLSPNSSITGDGGGRNGSSRDDQSRNIDYLTPGFSGGNHDMNKGDLSPY GMNSIARTIPNSKYLKAAQQLLDEVVNVRKAIKQPDKEKNQTTSEHGLNSAKDGDSGSKNGASNLQESTNSPSELSHAERQELQNKLTKLLSMLDEVDRR YKQYYHQMQIVVSSFDVISGCGAAKPYTALALQTISRHFRCLRDAITGQIHATRKSLGEQETSENSKGVGITRLRYVDQHLRQQRALHQLGMMQQHAWRP QRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEELGDAEMDSNSSSENAAKATKGDMGTSEDRGEEF QQSASSTATERCSAGQLMDPKSDHVPDMEMAGSTTRSNFQNGTRGEAFTEYGLLKLREDQRPSMDDCGLFSDAMAHSEGGGDRFMAAAAAAYQMSEVGRF GNGSGVSLTLGLQHCEGGNLPMPGTTHHGFVSMRGDDDIYNAASSVGAGATDFECLNPGNRQHRFSSSHVFHDFVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.004G159300 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	6.92	0.7563
AT5G13660			unknown protein		Potri.010G209300 [exp]	10.72	0.6880
AT4G16380			Heavy metal transport/detoxifi...		Potri.016G006700 [exp]	12.72	0.7228
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	14.14	0.7395
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	14.83	0.7652	Pt-CIP7.1
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	17.29	0.7145
AT1G55270			Galactose oxidase/kelch repeat...		Potri.003G217700 [exp]	17.74	0.6460
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	29.39	0.7391
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	31.27	0.5984
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	31.41	0.7379

Compare expression of checked genes

Potri.004G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.