Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAL1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 1138 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 1092 / 0 BGAL5 beta-galactosidase 5 (.1) AT3G13750 1011 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 961 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 943 / 0 BGAL4 beta-galactosidase 4 (.1) AT3G52840 935 / 0 BGAL2 beta-galactosidase 2 (.1) AT2G28470 844 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT5G63810 776 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G32810 740 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 696 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232600 [exp] 1173 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 1167 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 1039 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1031 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1011 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 832 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 827 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 766 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 766 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041798 [exp] 1143 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 1138 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 1107 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10028348 [exp] 1063 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10000803 [exp] 1024 / 0 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10000701 [exp] 1019 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 1013 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1007 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10006009 [exp] 958 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 952 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Potri.004G159800.6 pacid=42794462 polypeptide=Potri.004G159800.6.p locus=Potri.004G159800 ID=Potri.004G159800.6.v4.1 annot-version=v4.1 ATGGCAGCCAACTCAACTACCAAGTGGTTGTTTTCTCTCTCTGTAGTTTTGTTAACAAGTCTCCAGTTGATACAGTGCAATGTTACTTACGACAAGAAGG CACTTATTATCAATGGGCAGAGGAAGGTTCTCTTCTCTGGTTCTATTCACTATCCTAGAAGCACCCCTGAGATGTGGGAAGGTCTTATACAGAAGGCTAA AGATGGTGGTTTGGATGTTATAGACACTTATGTCTTTTGGAACCTTCACGAGCCTTCTCCTGGCAATTATAATTTTGACGGGAGATATGATTTGGTTCGG TTCATCAAGTTGGTCCATGAAGCTGGACTTTACGTGCATCTTCGGATTGGACCATATATATGTGCAGAATGGAACTTTGGAGGGTTTCCTGTCTGGTTGA AGTATGTTCCAGGGATCAGCTTTAGGACAGATAATGAGCCTTTCAAGTCGGCAATGCAAAAATTCACCCAAAAAATTGTTCAAATGATGAAAGATGAAAA TCTTTTTGAGTCTCAAGGTGGCCCAATAATCCTCTCTCAGATTGAGAATGAGTATGAGCCTGAAAGCAAGGCATTTGGATCTCCTGGTCATGCATATATG ACTTGGGCTGCACATATGGCTATTTCGATGGATACCGGGGTTCCATGGGTTATGTGCAAGGAGTTTGATGCCCCAGACCCAGTGATAAACACCTGCAATG GTTTTTACTGTGACTATTTCTCTCCAAATAAACCTTACAAACCCACAATGTGGACTGAGGCATGGACTGGCTGGTTCACAGACTTTGGTGGTCCAAACCA CCAGCGCCCGGCTGAGGATTTAGCATTTGCAGTTGCTCGGTTCATTCAGAAGGGAGGCTCTTTGGTTAACTACTACATGTACCATGGAGGAACCAACTTT GGAAGAACTTCTGGAGGTCCTTTCATCACTACAAGCTATGACTATGATGCGCCGATCGATGAATATGGATTGATCAGGCAACCTAAGTATGGCCACTTAA AGGAGCTACATAAGGCTATTAAATTATGTGAAAAAGCTTTGCTCGCTGCTGATTCTACTGTCACATCCCTGGGAAGTTATGAGCAGGCACATGTATTCTC TTCTGATTCTGGAGGCTGTGCAGCTTTTCTGTCAAACTACAACACGAAGCAAGCTGCGAGGGTAAAGTTCAATAACATCCAGTACAGCCTGCCACCTTGG TCTATCAGCATCCTTCCAGATTGCAAAAATGTTGTTTTCAACACTGCCCATGTTGGAGTTCAAACATCCCAAGTGCATATGTTGCCTACAGATTCTGAAT TGCTCTCATGGGAAACCTTCAACGAAGACATATCATCAGTGGATGATGATAAAATGATCACAGTTGCTGGCCTCTTGGAACAATTAAATATAACCAGAGA TACAAGTGACTACCTGTGGTACACAACGAGTGTTCATATAAGTTCATCGGAATCATTTCTGCGTGGAGGCCGACTTCCCGTTCTGACAGTGCAGTCAGCA GGCCATGCATTGCATGTTTTTATCAATGGAGAACTTTCAGGATCTGCACATGGGACTAGGGAGCAAAGGAGATTCACATTTACAGAAGATATGAAATTCC ATGCTGGGAAAAATAGAATTTCACTGCTCAGTGTGGCCGTTGGATTGCCGAATAATGGTCCCCGTTTTGAGACATGGAACACGGGAATCTTAGGGCCAGT TACTCTCCATGGCCTGGACGAAGGGCAAAGGGACTTGACCTGGCAGAAATGGTCGTACAAGGTTGGGCTTAAAGGAGAAGATATGAATCTACGATCTCGG AAATCCGTTTCACTAGTTGATTGGATACAAGGGTCCTTGATGGTAGGGAAACAACAACCATTGACATGGTACAAGGCCTATTTTAATTCACCAAAAGGAG ATGATCCCCTGGCTTTGGACATGGGCAGTATGGGGAAGGGCCAAGTGTGGATCAATGGGCATAGCATCGGAAGATATTGGACTCTTTATGCTGAAGGAAA TTGCAGTGGATGCAGCTATTCGGCTACATTCCGGCCTGCAAGGTGCCAACTGGGCTGTGGCCAACCAACTCAAAAATGGTACCATGTTCCGAGGTCATGG TTGAAGTCGACCCGAAATTTGTTGGTATTATTTGAAGAAATTGGAGGCGATGCGTCAAGAATTTCTCTTGTAAAACGATTGGTGACAAGTCATTGA
AA sequence Show only first row Show all	>Potri.004G159800.6 pacid=42794462 polypeptide=Potri.004G159800.6.p locus=Potri.004G159800 ID=Potri.004G159800.6.v4.1 annot-version=v4.1 MAANSTTKWLFSLSVVLLTSLQLIQCNVTYDKKALIINGQRKVLFSGSIHYPRSTPEMWEGLIQKAKDGGLDVIDTYVFWNLHEPSPGNYNFDGRYDLVR FIKLVHEAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGISFRTDNEPFKSAMQKFTQKIVQMMKDENLFESQGGPIILSQIENEYEPESKAFGSPGHAYM TWAAHMAISMDTGVPWVMCKEFDAPDPVINTCNGFYCDYFSPNKPYKPTMWTEAWTGWFTDFGGPNHQRPAEDLAFAVARFIQKGGSLVNYYMYHGGTNF GRTSGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHKAIKLCEKALLAADSTVTSLGSYEQAHVFSSDSGGCAAFLSNYNTKQAARVKFNNIQYSLPPW SISILPDCKNVVFNTAHVGVQTSQVHMLPTDSELLSWETFNEDISSVDDDKMITVAGLLEQLNITRDTSDYLWYTTSVHISSSESFLRGGRLPVLTVQSA GHALHVFINGELSGSAHGTREQRRFTFTEDMKFHAGKNRISLLSVAVGLPNNGPRFETWNTGILGPVTLHGLDEGQRDLTWQKWSYKVGLKGEDMNLRSR KSVSLVDWIQGSLMVGKQQPLTWYKAYFNSPKGDDPLALDMGSMGKGQVWINGHSIGRYWTLYAEGNCSGCSYSATFRPARCQLGCGQPTQKWYHVPRSW LKSTRNLLVLFEEIGGDASRISLVKRLVTSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.004G159800 [exp]	0	1	GAL1.4
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Potri.017G060000 [exp]	1.00	0.8526	SBP.2
AT3G26935			DHHC-type zinc finger family p...		Potri.001G070100 [exp]	4.47	0.8386
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	4.47	0.8359
AT2G28150			Domain of unknown function (DU...		Potri.004G216200 [exp]	5.00	0.8288
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Potri.004G147200 [exp]	5.19	0.7799
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024800 [exp]	6.24	0.8380
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.017G108000 [exp]	15.09	0.8069
AT2G44830			Protein kinase superfamily pro...		Potri.002G137700 [exp]	24.33	0.7813
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.010G043200 [exp]	24.89	0.7536
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.015G066000 [exp]	26.45	0.7862	HA2.2

Compare expression of checked genes

Potri.004G159800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.