Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39100 322 / 5e-113 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G22140 318 / 3e-111 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 217 / 7e-72 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 58 / 8e-10 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G23120 56 / 4e-09 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G12620 54 / 2e-08 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT3G43990 51 / 2e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G11560 50 / 6e-07 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 47 / 5e-06 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G02470 43 / 6e-05 Alfin AL6 alfin-like 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121000 [exp] 422 / 1e-152 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 319 / 7e-112 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 319 / 8e-112 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 317 / 4e-111 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 316 / 1e-110 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 313 / 2e-109 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G127400 [exp] 54 / 2e-08 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G104300 [exp] 52 / 1e-07 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 49 / 9e-07 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017482 [exp] 388 / 6e-139 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 376 / 3e-134 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 336 / 1e-118 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 303 / 3e-105 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 300 / 4e-104 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 260 / 2e-85 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10008492 [exp] 50 / 5e-07 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 50 / 5e-07 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10033410 [exp] 47 / 4e-06 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10031279 [exp] 45 / 3e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.004G159900.2 pacid=42795317 polypeptide=Potri.004G159900.2.p locus=Potri.004G159900 ID=Potri.004G159900.2.v4.1 annot-version=v4.1 ATGGCTAAAGCTAAAGCACCAAGACGCACTCTTGACTCTTACACTGTTAAACCCATCAACAAAACCGTTAAACCTGGAGATTGCGTGTTGATGCGGCCAT CGGATCCGTCGAAGCCTTCTTACGTGGCAAAGATTGAGCGGATCGAATCCGACGGTAGAGGGCCCAACGTGAGAGTACGGGTGCGGTGGTATTACCGGCC GGAGGAATCAATCGGTGGTCGCCGGCAGTTTCATGGCTCAAAGGAGGTTTTTCTATCCGATCATTATGATACTCAGAGTGCAGATACGATTGAAGGGAAG TGTATGGTTCATAGTTTCAAGAATTACACGAAGCTTGATGCTGTTGGGAACGATGATTTCTTTTGTCGTTTTGAGTATAATTCGTCTACTGGTGCTTTTA ATCCTGATAGAGTTGCCGTGTATTGCAAATGTGAGATGCCTTACAATCCTGATGACTTGATGGTTCAATGTGAAGGCTGCAGTGACTGGTTTCATCCTGC TTGTATAGAAATGTCTGCAGAGGAAGCTAAAAGACTTGATCATTTCTTCTGTGAAAACTGCTCATCTGAAGGCCAGAAGAAGCTGCAGAATTCCCACAAT ACCAGACAATCAGATGCAAAGGCGGAAACAAAGAGGCGCCGGAGGTGA
AA sequence Show only first row Show all	>Potri.004G159900.2 pacid=42795317 polypeptide=Potri.004G159900.2.p locus=Potri.004G159900 ID=Potri.004G159900.2.v4.1 annot-version=v4.1 MAKAKAPRRTLDSYTVKPINKTVKPGDCVLMRPSDPSKPSYVAKIERIESDGRGPNVRVRVRWYYRPEESIGGRRQFHGSKEVFLSDHYDTQSADTIEGK CMVHSFKNYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIEMSAEEAKRLDHFFCENCSSEGQKKLQNSHN TRQSDAKAETKRRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39100		SHL1	short life, PHD finger family ...		Potri.004G159900 [exp]	0	1
AT5G56140			RNA-binding KH domain-containi...		Potri.011G168000 [exp]	3.87	0.7825
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	5.74	0.7689
AT5G57950			26S proteasome regulatory subu...		Potri.006G184600 [exp]	7.48	0.8032
AT2G30270			Protein of unknown function (D...		Potri.019G126300 [exp]	10.58	0.7622
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.005G141100 [exp]	13.26	0.7827	Pt-AHUS5.1
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.005G178600 [exp]	14.31	0.7360
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	18.76	0.7062
					Potri.003G137900 [exp]	19.51	0.7866
AT3G62450			unknown protein		Potri.005G071700 [exp]	23.87	0.7370
AT1G78895			Reticulon family protein (.1)		Potri.008G004200 [exp]	28.67	0.7823

Compare expression of checked genes

Potri.004G159900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.