Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16405 731 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 105 / 6e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 82 / 8e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 72 / 7e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 69 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 68 / 1e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 63 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 61 / 2e-09 TAF5 TBP-associated factor 5 (.1) AT2G37670 60 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 59 / 6e-09 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121100 [exp] 646 / 0 AT2G16405 517 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 102 / 5e-24 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 95 / 2e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 92 / 3e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 77 / 1e-14 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 74 / 1e-13 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 72 / 4e-13 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 69 / 4e-12 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 68 / 9e-12 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028800 [exp] 698 / 0 AT2G16405 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017483 [exp] 670 / 0 AT2G16405 637 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 94 / 5e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 92 / 3e-20 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 92 / 4e-20 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 91 / 7e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003206 [exp] 69 / 4e-12 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 67 / 1e-11 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 66 / 5e-11 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003974 [exp] 64 / 3e-10 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G160000.1 pacid=42796599 polypeptide=Potri.004G160000.1.p locus=Potri.004G160000 ID=Potri.004G160000.1.v4.1 annot-version=v4.1 ATGCATCGGAGTCTCAATAAAATGGCGGAGCAGGTGGAGGAGCCAGTAGATAACAACAGCAACGACAAAGTAAACAACGGCTCAACAGAATCTAACAGAA ACGAGAATAATAATAATAACAATAATGATGAAGAGAATAAGGATAAGAAGAAAAATGTAGATCCAGAATTATTCAGCTGTTTGCTTCAGCCTGTTACTTC GGATTCCGATCCTGATTACATCGGCATTCGCCGTCTCCTTCTCTACAGGAAAGCCGAGTCCGGTGTTCGCCGCCGTCTTGATTGGAGATGCAATGGAAAA GGGTATACGAGCTATCGTAATTACATTCGCAGGCCAAGAAATTGGGATGGTTTGCCAAGCCACCAAAGCACTCCCGGAAACAGTGGGCGATGGCTTCAAT CTACGACTCCACCTTCCCATTTGTTCGAGGTGGACAGTTGGACTTCCAGCAGGGACCTGCGAAGTACCAACCTGCCTTCTACTCACAGAACAAGTTTCAG CTCAACTGCAAGTGATAATGATTCCCTACGCCGCCGAGGGGCTGAACCTGCATATTCTTTTGTAGGAATGCATTGCATCTTTGATCAGTGCAAAGCTGCT GTTACTGTTTTGAAGTTTGGGCACATGAGTTCTGATTTACTTGCATATGGGGCGTCAGATGGAACCTTGACAGTGTGCTTAGTCTCAGACCCACCTTCAG TCATCAAAAAATTAGAGGGCCATTCTAAAGATGTCACAGACTTCGACTTCTCGTCCAATAATCAGTACATTGCTTCAGCATCCATGGATAAAACTGTGAG AGTATGGGAGTTATCAAAAGGGATTTGCATTCGAGTAATATATGGAGTCTCTTCACAATTGTGTATTCGTTTTCATCCTGTAAACAACAACTTCCTCTCA GTTGGCAATGCAAACAGAGAAATTACCGTATTCAATTTCAGCACTGGCAGGATTATTAATAAATTGGTGTTTGACGATAAGGTTACATCCATGGACCATG ATCACACTGGTCACCTCATTTTCTGCGGGGATGCACAGGGATGTGTATACTCCACAAGCATGGACTCACACACGGGTGCATTGTCGCGGTCTCATCGCTA TCGAAGTAGTGGCAAGAGCAAATATCCAGTAACAACTGTTCAGTACCGGAGTTTCTCTCTGCTAGCAGGAGGCCCCGTGTTGCTGACCTGTACTCAAGAT GGAAGTTTGTCATTCTATAGTGTTGCCTTGGAAATTAAAGGTTATCTGACTCTTCGTTGCTCACTCAAATTGGCTCCACGAGTACATAGCATCCGGGCTT CTTTCTGCCCCTTGCTTTCCCTTGAAAAAGGAGAGTATATAGTTGCCGGAAGTGAGGATTCAAACGTTTATTTCTATGATTTGACTCGGCCAAAGCATAC ATGCGTCAACAAGCTACAGGGTCATCGCTTTCCAGTCGGTGATGTTGCGTGGAACCACGGGGAGAATTTGCTGGCTACATCCGATCTGTATGGCATCGTT ATTGTATGGAAGAGAGAGAAGACAAGTCAAGACAAATATAAGCGGTAA
AA sequence Show only first row Show all	>Potri.004G160000.1 pacid=42796599 polypeptide=Potri.004G160000.1.p locus=Potri.004G160000 ID=Potri.004G160000.1.v4.1 annot-version=v4.1 MHRSLNKMAEQVEEPVDNNSNDKVNNGSTESNRNENNNNNNNDEENKDKKKNVDPELFSCLLQPVTSDSDPDYIGIRRLLLYRKAESGVRRRLDWRCNGK GYTSYRNYIRRPRNWDGLPSHQSTPGNSGRWLQSTTPPSHLFEVDSWTSSRDLRSTNLPSTHRTSFSSTASDNDSLRRRGAEPAYSFVGMHCIFDQCKAA VTVLKFGHMSSDLLAYGASDGTLTVCLVSDPPSVIKKLEGHSKDVTDFDFSSNNQYIASASMDKTVRVWELSKGICIRVIYGVSSQLCIRFHPVNNNFLS VGNANREITVFNFSTGRIINKLVFDDKVTSMDHDHTGHLIFCGDAQGCVYSTSMDSHTGALSRSHRYRSSGKSKYPVTTVQYRSFSLLAGGPVLLTCTQD GSLSFYSVALEIKGYLTLRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHRFPVGDVAWNHGENLLATSDLYGIV IVWKREKTSQDKYKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16405			Transducin/WD40 repeat-like su...		Potri.004G160000 [exp]	0	1
AT2G27900			unknown protein		Potri.001G212600 [exp]	1.41	0.9366
AT1G21480			Exostosin family protein (.1.2...		Potri.002G072300 [exp]	2.00	0.9291
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	3.87	0.9293	Pt-DH1.2
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	5.47	0.9331
AT3G48860			unknown protein		Potri.001G065800 [exp]	6.00	0.9241
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	8.30	0.9038
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	10.48	0.9049
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	10.58	0.9219
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	11.09	0.8957
AT1G16170			unknown protein		Potri.001G040300 [exp]	13.41	0.9191

Compare expression of checked genes

Potri.004G160000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.