Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RD19.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39090 550 / 0 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT2G21430 542 / 0 Papain family cysteine protease (.1) AT4G16190 498 / 2e-177 Papain family cysteine protease (.1) AT3G54940 410 / 6e-143 Papain family cysteine protease (.2) AT3G19390 219 / 2e-67 Granulin repeat cysteine protease family protein (.1) AT4G36880 212 / 1e-65 CP1 cysteine proteinase1 (.1) AT3G19400 209 / 3e-64 Cysteine proteinases superfamily protein (.1.2) AT1G06260 204 / 8e-63 Cysteine proteinases superfamily protein (.1) AT1G47128 206 / 2e-62 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT1G20850 202 / 7e-62 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121300 [exp] 660 / 0 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.002G028700 [exp] 565 / 0 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 539 / 0 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.010G228400 [exp] 377 / 1e-129 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.007G047600 [exp] 216 / 6e-67 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 208 / 8e-64 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.004G207600 [exp] 206 / 1e-63 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.014G024100 [exp] 206 / 6e-62 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 204 / 2e-61 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028797 [exp] 568 / 0 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017487 [exp] 548 / 0 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10024303 [exp] 509 / 0 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10002103 [exp] 453 / 2e-161 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10038684 [exp] 386 / 4e-133 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10037951 [exp] 355 / 3e-119 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10017489 [exp] 315 / 7e-108 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10024801 [exp] 211 / 5e-64 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 207 / 2e-62 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10030722 [exp] 203 / 3e-62 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.004G160300.2 pacid=42793900 polypeptide=Potri.004G160300.2.p locus=Potri.004G160300 ID=Potri.004G160300.2.v4.1 annot-version=v4.1 ATGTCTCTCAATCTCTCTCTCCTTGTCATCCTCTCTCTCCTGTTTATCTCCGCAGTTCATGCGGAGACACTCAACGGTGATGATCCCTTGATCAGGGAAG TAGTGGACGGTCAGGATGCGTCATCATCAAACCTGTTAAGCGCAGAGCAGCATCACTTCTCGCTGTTCAAGAGTAAATTCAAGAAATCCTACGGCTCACA GGAAGAGCATGATTACCGGTTCTCGGTATTCAAGGCTAATCTGAGACGCGCGGCGCGTCATCAGGAATTGGACCCAACGGCGAGTCATGGAGTGACTCAG TTCTCCGATTTGACTCCGGCGGAGTTTAGAAAGCAGGTTTTAGGGTTGCGCAGGTTGAGGTTGCCTAAGGATGCGAATGAAGCTCCGATTCTACCTACTA GTGATTTGCCTGAGGATTTTGATTGGAGAGATAAAGGAGCTGTTGGTCCTATTAAAAATCAGGGTTCATGTGGGTCATGCTGGAGTTTTAGTGCCACAGG AGCTTTGGAAGGTGCCCACTTTCTTGCAACTGGAGAGCTTGTTAGCCTCAGTGAACAGCAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAAGAACCA GGTTCATGTGACTCTGGATGCAATGGTGGGTTGATGAATAGCGCCTTTGAGTACACTCTCAAAGCTGGTGGTCTTATGCGCGAGGAAGACTATCCTTACA CTGGTACTGATCGTGATGCTTGCAAATTTGACAAGAACAAGGTTGCAGCAAGAGTGGCCAACTTTAGTGTTGTTTCCCTTGATGAGGATCAAATTGCCGC AAATCTTGTGAAAAACGGACCTCTTGCAGTGGCCATCAATGCTGTGTTCATGCAAACATACATTGGAGGAGTGTCGTGCCCGTATATCTGCTCAAGGAGG CTGGATCATGGAGTGTTGCTGGTGGGATATGGTTCAGCTGGCTATTCTCCTGTCAGGATGAAGGAAAAGCCATTCTGGATCATCAAGAACTCCTGGGGAG AAAAGTGGGGAGAGAATGGATTCTACAAGATCTGCAGGGGTCGCAATGTTTGCGGAGTAGACTCCATGGTCTCAACTGTTGCTGCCGTGCAGACCAGCTC CCAGTAG
AA sequence Show only first row Show all	>Potri.004G160300.2 pacid=42793900 polypeptide=Potri.004G160300.2.p locus=Potri.004G160300 ID=Potri.004G160300.2.v4.1 annot-version=v4.1 MSLNLSLLVILSLLFISAVHAETLNGDDPLIREVVDGQDASSSNLLSAEQHHFSLFKSKFKKSYGSQEEHDYRFSVFKANLRRAARHQELDPTASHGVTQ FSDLTPAEFRKQVLGLRRLRLPKDANEAPILPTSDLPEDFDWRDKGAVGPIKNQGSCGSCWSFSATGALEGAHFLATGELVSLSEQQLVDCDHECDPEEP GSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRDACKFDKNKVAARVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSRR LDHGVLLVGYGSAGYSPVRMKEKPFWIIKNSWGEKWGENGFYKICRGRNVCGVDSMVSTVAAVQTSSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	0	1	RD19.3
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	1.00	0.7771
AT5G17010			Major facilitator superfamily ...		Potri.019G055600 [exp]	3.00	0.7069
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	3.16	0.7344
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	4.69	0.6723
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	4.89	0.6996
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	5.65	0.6884	MMK3.1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.010G208500 [exp]	7.93	0.6923
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	8.83	0.6660	SOYAP4.1
AT1G25420			Regulator of Vps4 activity in ...		Potri.008G121300 [exp]	9.79	0.6691
AT1G02816			Protein of unknown function, D...		Potri.014G127600 [exp]	13.78	0.6081

Compare expression of checked genes

Potri.004G160300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.