Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39080 1245 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1202 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT2G28520 958 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121400 [exp] 1442 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.005G234100 [exp] 1184 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1) Potri.002G028600 [exp] 1182 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017490 [exp] 1229 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10024304 [exp] 1184 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10028796 [exp] 1138 / 0 AT4G39080 1193 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1124 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 1008 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 1004 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 115 / 5e-30 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [poplar] [flax] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Potri.004G160400.1 pacid=42796175 polypeptide=Potri.004G160400.1.p locus=Potri.004G160400 ID=Potri.004G160400.1.v4.1 annot-version=v4.1 ATGGCGGAGGCAAGAGTAGCAGGAGGAGGATGCTGTCCGCCGATGGATCTGTTCAGGTCAGAAGCGATGCAATTGGTGCAGCTTATCATCCCTATCGAAT CTGCTCACCACACTGTCTCTTACATCGGCGACCTCGGTCTCATCCAATTCAAAGATCTCAATGCAGATAAGAGTCCGTTTCAGAGAACTTATGCTGCTCA GATCAAAAAATTTGGAGAGATGGCTCGAAAGCTACGGTTTTTCAAGGAACAAATGGAGAAGGCAGGTGTTACACCTTCAACTAAACCTATGACACAAACT GAGATTGATGTGGATGACCTAGAGGTAAAACTTGGGGAATTTGAGGCAGAGCTGGTTGAAATGAACACAAATGATGAAAAATTACAGCGCTCTTATAATG AGCTTGTGGAATATAAGCTTGTCCTCAACAAGGCTGGTGGGTTTTTCTCTTCTGCCTTTAGCAGTGCAACTGCTCAGCAAAAGGAAATAGAATCCCAACA AACTGGCGAAGAATCACTAGATACTCCTCTATTACAGGACAGAGAAATATCAATTGAGTCATCAAAACAAGTAAAGTTGGGGTTTATTACTGGCCTTGTT TCCAAAGAAAAGTCTATGCTATTTGAAAGAATTATATTTCGTGCTACCCGGGGTAATGTGTACACCAGGCAGGCTGCTGTAGAGGAACCTGTCATTGATC CTGTTTCTGGAGAGAAGGTTGAGAAGAATGTATTTGTTGTCTTTTATTCAGGAGAAAAAGCAAAGACCAAAATACTAAGAATTTGTGAAGCATTTGGTGC AAATCGTTACTCTTTCACTGAGGATTTTGGAAAACAAGTTCAAATGATCTCTGAAGTTTCAGGAAGACTTGCTGAGCTGAGAACCGCAATAGATGCAGGA TTGCTTCAGAAGAGTAAATTGTTGCAGACTATTGGTGATCAATTTGTGCAGTGGAACACTTTGGCGAGGAAGGAGAAATCCATCTACCACACGATGAACA TGCTCAGCCTGGATGTGACCAAGAAGTGTCTTGTTGCTGAGGGGTGGAGTCCTGTTTTTGCTACAAATCTGATCCAGGATGCACTGCAGAAAGCTGCATT TGATTCCAACTCACAAGTTGGAGCAATTTTCCAGGTTCTACATACATCAGAGTCACCACCTACATACTTCCACACAAACAAGTTTACTTCTGCTTTTCAA GATATTGTTGATGCGTATGGGGTGGCTAAGTATCAAGAAGCAAATCCGGGCGTGTACACTATTGTTACATTCCCTTTTCTTTTTGCTGTCATGTTTGGTG ACTGGGGGCATGGAATTTGCTTGTTGCTTGCGGCATTAGTCTTCATAATCAGGGAAAAGAAACTTTCTGGCCAGAAACTTGGAGATATCACTGAAATGAC CTTTGGTGGTCGCTATGTTATCCTGATGATGGCACTCTTTTCAATTTACACTGGTATTATTTATAACGAATTCTTCTCGGTCCCCTTCGAACTATTTGCT CCATCAGCATATGCATGCCGTGATCTCTCTTGCAGGGATGCTACCACAGTTGGTTTGATAAAAGCACGCCCCACTTACCCATTTGGTGTAGATCCTGTAT GGCATGGCAGCCGCAGTGAGCTGCCTTTTCTCAACTCTCTGAAGATGAAAATGTCAATCCTTATTGGGGTTACTCAAATGAACCTTGGAATCATATTGAG TTATTTCAATGCAGCATACTTTAGAAACAGCTTGAATGTCTGGTTCCAATTTATCCCCCAAATTATATTTTTAAACAGCTTGTTTGGCTATTTGTCACTC CTTATCATTCTGAAGTGGTGCACTGGTTCTCAAGCTGACTTATACCATGTGATGATATACATGTTCCTGAGTCCAACAGACGAGTTGGGAGAAAATCAGC TTTTTCCTCAGCAAAAAACTGTACAGCTTGTGCTATTACTATTGGCCCTTGTTTCGGTACCATGGATGCTACTCCCAAAGCCATTCCTTTTAAAGATGCA ACACCAAGCTAGGCAAGGTGAATCATACATGCCACTTCAGAGCACCGAGGAGTCTCTTCAATTGGAGGCGAACCATGATTCACATGGTCATGAGGAATTT GAATTCAGTGAAGTTTTTGTACATCAGATGATACATACCATTGAGTTTGTACTGGGAGCAGTCTCAAACACAGCTTCGTATCTTCGATTATGGGCCCTCA GTCTTGCGCACTCGGAGTTGTCTAGTGTATTCTACGAGAAGGTCCTTCTCCTTGCGTGGGGGTACAACAATATTATCATCCTTGCTGTTGGTGCCATCTT GTTTATTTTCGTAACTGTTGGTGTATTGCTGGTGATGGAAACTCTGAGTGCTTTCTTACATGCCTTGCGTCTTCACTGGGTGGAATTCCAAAATAAATTC TACGAGGGAGATGGTTACAAGTTTTATCCCTTTTCATTTGCATCAGTAAATGATGAGGTAGAATGA
AA sequence Show only first row Show all	>Potri.004G160400.1 pacid=42796175 polypeptide=Potri.004G160400.1.p locus=Potri.004G160400 ID=Potri.004G160400.1.v4.1 annot-version=v4.1 MAEARVAGGGCCPPMDLFRSEAMQLVQLIIPIESAHHTVSYIGDLGLIQFKDLNADKSPFQRTYAAQIKKFGEMARKLRFFKEQMEKAGVTPSTKPMTQT EIDVDDLEVKLGEFEAELVEMNTNDEKLQRSYNELVEYKLVLNKAGGFFSSAFSSATAQQKEIESQQTGEESLDTPLLQDREISIESSKQVKLGFITGLV SKEKSMLFERIIFRATRGNVYTRQAAVEEPVIDPVSGEKVEKNVFVVFYSGEKAKTKILRICEAFGANRYSFTEDFGKQVQMISEVSGRLAELRTAIDAG LLQKSKLLQTIGDQFVQWNTLARKEKSIYHTMNMLSLDVTKKCLVAEGWSPVFATNLIQDALQKAAFDSNSQVGAIFQVLHTSESPPTYFHTNKFTSAFQ DIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLAALVFIIREKKLSGQKLGDITEMTFGGRYVILMMALFSIYTGIIYNEFFSVPFELFA PSAYACRDLSCRDATTVGLIKARPTYPFGVDPVWHGSRSELPFLNSLKMKMSILIGVTQMNLGIILSYFNAAYFRNSLNVWFQFIPQIIFLNSLFGYLSL LIILKWCTGSQADLYHVMIYMFLSPTDELGENQLFPQQKTVQLVLLLLALVSVPWMLLPKPFLLKMQHQARQGESYMPLQSTEESLQLEANHDSHGHEEF EFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNIIILAVGAILFIFVTVGVLLVMETLSAFLHALRLHWVEFQNKF YEGDGYKFYPFSFASVNDEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	0	1
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	1.41	0.8289
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	3.16	0.8238
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	4.12	0.7515	Pt-CUL1.3
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.012G062300 [exp]	4.89	0.7404
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	5.29	0.7988
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.006G108800 [exp]	6.00	0.7855	Pt-VMVSR.1
AT3G19553			Amino acid permease family pro...		Potri.009G090300 [exp]	6.40	0.7183	PtrLAT7
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	7.74	0.7921
AT3G53120		VPS37-1	Modifier of rudimentary (Mod(r...		Potri.006G119200 [exp]	10.48	0.7814
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	14.83	0.7412

Compare expression of checked genes

Potri.004G160400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.