Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66350 170 / 4e-52 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT3G51060 164 / 2e-49 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT2G21400 151 / 2e-46 SRS3 SHI-related sequence3 (.1) AT1G75520 154 / 9e-46 SRS5 SHI-related sequence 5 (.1) AT1G19790 143 / 2e-41 SRS7 SHI-related sequence 7 (.1.2) AT4G36260 132 / 1e-37 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT2G18120 122 / 1e-34 SRS4 SHI-related sequence 4 (.1) AT5G12330 113 / 2e-30 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT3G54430 85 / 1e-20 SRS6 SHI-related sequence 6 (.1) AT5G33210 78 / 1e-18 SRS8 SHI-related sequence 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121600 [exp] 308 / 7e-108 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.005G118200 [exp] 187 / 2e-58 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 186 / 2e-58 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.002G028500 [exp] 168 / 3e-51 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.005G234200 [exp] 160 / 3e-48 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.009G070800 [exp] 123 / 1e-33 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.003G196100 [exp] 117 / 5e-32 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G276200 [exp] 117 / 2e-31 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 112 / 2e-30 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028352 [exp] 157 / 6e-47 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10024305 [exp] 155 / 8e-46 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10003416 [exp] 153 / 4e-45 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10036032 [exp] 119 / 5e-33 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10017492 [exp] 97 / 7e-25 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1) Lus10028794 [exp] 96 / 1e-24 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10041802 [exp] 86 / 3e-20 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10009697 [exp] 79 / 2e-18 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10041803 [exp] 56 / 4e-10 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [poplar] [flax] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Potri.004G160600.6 pacid=42795559 polypeptide=Potri.004G160600.6.p locus=Potri.004G160600 ID=Potri.004G160600.6.v4.1 annot-version=v4.1 ATGATGATGATGATGAGACAAGGAAGTAATTTGGGGGGCTCAAGGTGTCAAGAATGTGGAAACCAAGCTAAGAAAGACTGTGTTTACATGAGATGCAGAA CATGCTGTAACAGTAAAGGATTTCAGTGTCAAACACATGTTAAGAGCACTTGGGTTCCCGCTTGTAGACGGCGACAGAGGGCTCAAAATCTTTTGCCTTG TCAACAACAGCAGCTTCAAGGACACAACCCTAAAAGGCCCAGAGAAAATCCCTCAACAGGTTTAGAAATCGAGAATTTTCCTGCTGAAGTGAACTCAACA GTCACATTTCGTTGCTTTAGAGTGAGCTCCATTGATGAATCAGTTGATCAATTTGCATATCAAACGAGTGTTAATATAGGAGGCCGTGTTTTCAAGGGAA TTCTCTACGATCAAGGTCCTCATGAAAGTCGTTATTACTTTGGTGAAAGCTCTTCCAGACAACTTCAAGAGCCTAATCTCCCAAGTGCAGATGCCCTAAC TCCTGGCGCTTTAGCTTCAACTTCGGGTGCTGCAGAATCTCTTGCACACCCTTCATATCCATTTCCCCTTACTGCTTCCATGTCCGGTACGCAACTTTTC CTGCACCCAAAATCTTAG
AA sequence Show only first row Show all	>Potri.004G160600.6 pacid=42795559 polypeptide=Potri.004G160600.6.p locus=Potri.004G160600 ID=Potri.004G160600.6.v4.1 annot-version=v4.1 MMMMMRQGSNLGGSRCQECGNQAKKDCVYMRCRTCCNSKGFQCQTHVKSTWVPACRRRQRAQNLLPCQQQQLQGHNPKRPRENPSTGLEIENFPAEVNST VTFRCFRVSSIDESVDQFAYQTSVNIGGRVFKGILYDQGPHESRYYFGESSSRQLQEPNLPSADALTPGALASTSGAAESLAHPSYPFPLTASMSGTQLF LHPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.004G160600 [exp]	0	1
AT4G34660			SH3 domain-containing protein ...		Potri.003G105200 [exp]	6.92	0.7078
					Potri.019G076450 [exp]	15.81	0.7192
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	19.44	0.7069
AT4G27220			NB-ARC domain-containing disea...		Potri.005G061860 [exp]	26.53	0.7021
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	28.61	0.6954
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G200400 [exp]	28.84	0.6931
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	31.96	0.6954
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	34.87	0.6907
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	34.92	0.6892
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016375 [exp]	35.91	0.6951

Compare expression of checked genes

Potri.004G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.