Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 1412 / 0 Kinesin motor family protein (.1) AT2G21380 1311 / 0 Kinesin motor family protein (.1) AT1G21730 751 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G06670 702 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 624 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 337 / 1e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 301 / 1e-87 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G24170 288 / 9e-82 ATP binding microtubule motor family protein (.1) AT3G43210 282 / 5e-80 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT1G18370 280 / 4e-79 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122100 [exp] 1829 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.002G081300 [exp] 673 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G060400 [exp] 666 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 656 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G040700 [exp] 342 / 3e-99 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 305 / 8e-89 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G136600 [exp] 298 / 1e-85 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 294 / 1e-84 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 284 / 9e-81 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017969 [exp] 1585 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 1296 / 0 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 1287 / 0 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 1196 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10016236 [exp] 660 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018145 [exp] 645 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029307 [exp] 645 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025688 [exp] 644 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 338 / 1e-98 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 338 / 7e-98 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.004G161100.3 pacid=42795689 polypeptide=Potri.004G161100.3.p locus=Potri.004G161100 ID=Potri.004G161100.3.v4.1 annot-version=v4.1 ATGGCGTCATCTTCCAGAGCGAGAAGCAGCTCTCCATTCTCGTATCGAAAACCGTCAAGTCCTTACTCCTCAGCTTCTTCAACAACATCTTATAATAACA GGCTAATGCCACGTTCGTGCTCGACTTCTGCTTCTTCATTTTTCGGTTCGCGATCCGTGACGCCGAGTCGAGATCGGTCTGATTCAATGCACTACGGCCT CTCAAATGGCGTCGGTGCTTATGGTGGTAGTCTGAATCCGGTCGGGTTCGGGTCGGAGGAGTTGATTGCTGAACCGATTGATCAACCGAGGAATGGTGGT GATAGTATTTCGGTTACGATTCGGTTTAGACCGTTGAGTGAAAGGGAGTTCCAGAGAGGAGATGAAATAGCATGGTCCGCGGATGGAGATAAGATTGTGA GGAACGAGTATAATCCAGCTACTGCTTATGCATTTGATAAGGTGTTTGGACCGCACACAGCCTCTCAAGAGGTGTATGAGGTTGCCGCAAAACCTGTGGT CAAGGCTGCAATGGAAGGTGTTAATGGAACTGTTTTTGCATATGGTGTTACTAGTAGTGGAAAGACACATACTATGCATGGAGACCAAAATTCTCCTGGT ATTATACCACTTGCCATAAAGGATGTTTTCAGTAGCATCCAAGATACTCCAGGAAGAGAGTTCCTACTACGCGTGTCCTATCTTGAAATTTACAATGAGG TGATAAATGACTTGCTTGACCCAACAGGTCAAAATTTGCGTGTCAGGGAAGATGCACAGGGCACCTATGTTGAGGGTATAAAGGAAGAAGTGGTTTTATC TCCTGGGCATGCACTTTCTTTCATTGCTGCTGGAGAAGAGCATCGCCATGTTGGTTCAAATAATTTTAATCTGTTCAGCAGCCGAAGTCACACCATATTC ACTCTGATGATAGAAAGTAGTGCTCACGGAGATGAATACGACGGAGTGATTTTCTCTCAACTTAATCTGATTGATCTAGCTGGATCTGAGAGTTCCAAAA CTGAAACAACTGGAATAAGGAGAAAGGAAGGATCTTACATAAACAAAAGTCTTCTAACTCTTGGAACTGTGATTGGAAAGCTGAGCGAAGGAAGGGCATC TCATGTTCCATATCGAGATTCCAAACTTACACGCCTTTTGCAGTCTTCGTTGAGTGGGCATGGGCATGTTTCACTTATTTGTACCGTCACTCCTGCATCA AGTAACATGGAAGAAACTCATAATACATTGAAGTTTGCTAGCAGGGCAAAGCGAGTTGAAATATATGCTTCACGCAATAAGATTATTGATGAGAAATCTT TGATCAAGAAATATCAGAAAGAAATCTCAAGCCTCAAGCAGGAACTTGATCAATTAAGACATGGGATGCTTGCTGGTGTTAGCCATGAGGAGATTCTGAG CTTAAGGCAAAAGTTGGAGGAAGGTCAGGTGAAGATGCAATCAAGGCTTGAGGAAGAAGAGGAAGCCAAGGCTGCTCTAATGAGTAGGATTCAGAGGCTA ACTAAACTCATACTTGTCTCTACAAAGAATACGATTCCTGGATTGACTGATGTTCCAGGTCACCAGCCGAGTCATTCTGTTGGGGAGGATGATAAATCGG ATGTTTTGCGAGAAGGTGCTTTACTTGCAGAAAATGAGAATCAAAAGGACTCTCCATCTTCTGCTTCTTTGATAGCATCGGATCTAACTTACGAATTTAA ACATCGAAGATCTTCCAGTATGTGGAATGAAGAACTCTCACCAGCTAGCAGTACTGTTACTGAATCGACTCAATCATACGAACTTATGGGTACTTCAAAA CTGGCACCAGGTGGGATGACCCAAGACCAGATGGACCTTCTTGTGGAGCAGGTTAAGATGCTTGCTGGAGAGATTGCATTCAGCACTAGTACCCTGAAGC GCCTGGTGGAGCATTCTGTAAATGATCCTGATAACTCAAAAACTCAAATCCAGAACTTGGAGCGAGAGATCTGGGAAAAGAAGAGGCAAATGAGAGTCTT AGAACAGCGCATTATTGAGAGTGGTGAGGCATCAATTGCTAATGCCTCATTGGTTGATATGCAGCAGACAGTAATGAGATTGATGACCCAATGTAATGAA AAGGCTTTTGAGCTGGAGATAAAATCAGCTGACAACCGTATTCTCCAAGAACAGCTTCAGAATAAGTGTTCCGAGAACAAAGAATTGCAAGACAAGGTGA CTCTCCTAGAGCATCGGTTGGCTTCACTCTCTGGTGATAAAGCATCAGTAAACTCTGAACACAACATGTCTGAAGAATATGTGGATGAATTGAAAAAGAA AGTTCAGTCCCAGGAGATTGAGAACGAAAAGCTAAAGATTGGACAGGTTCAGATTTCAGAGGAGAATAGTGGATTGCGGGTGCAAAATCAGAAATTGTCC GAAGAAGCTTCTTATGCAAAGGAACTGGCCTCTGCTGCTGCAGTTGAGCTGAAAAATTTAGCTGGTGAAGTGACAAAGCTCTCATTACAGAATGCAAAAT TGGAAAAAGAATTGCTGGCTGCTCGAGAATCTGTGCATTCTAGAGGTGCTGGCATGCAATCAGTTAATGGAGTTAACCGCAAGTTTAATGATGGCATAAG ACATGGGAGGAAGGGGCGGTTCTCTGGCAGAGGAAATGATTTTTCAGGAATGCATTCTGATGACTTTGAGTCGTGGAATCTTGATCCAGATGATTTGAAA AGGGAACTGCAGGCAAGAAAACAACGCGAAGCGGCACTGGAGGCAGCCTTGGCTGAAAAGGAATTCATAGAAGATGAATACAGGAAAAAGTGTGAAGAGG CAAAAAAAAGGGAGGGGGCTCTGGAAAATGACTTAGCAAACATGTGGGTGCTTGTTGCGAAGTTAAAGAGAGAGGATAGTGCTATCTTTGGGATGAATGC TGATGAAAGGCATAGTGATGGTATAGATCACACTAGTGATCCTAAAACAAATGGTGTTGAAGTTGATCGTAATAGCATCCTGAAAGAGAGAGAAGATTTG GATGCATCACAAGTTGATGAAACTCCCAAGGAAGAGCCCCTAGTTGTTCGGTTGAAGGCGCGGATACAAGAGATGAAGGAAAAGGAGCTCAAACAACTGG GAAATGGAGATGCTAATTCCCATGTGTGCAAAGTATGTTTTGAATCACCAACAGCAGCAATTCTTCTCCCCTGTCGACATTTTTGCTTGTGTAAATCTTG TTCGCTTGCATGTTCTGAGTGTCCAATTTGTCGCACAAAGATTGCAGATAGGCTTTTTGCATTTACTTGA
AA sequence Show only first row Show all	>Potri.004G161100.3 pacid=42795689 polypeptide=Potri.004G161100.3.p locus=Potri.004G161100 ID=Potri.004G161100.3.v4.1 annot-version=v4.1 MASSSRARSSSPFSYRKPSSPYSSASSTTSYNNRLMPRSCSTSASSFFGSRSVTPSRDRSDSMHYGLSNGVGAYGGSLNPVGFGSEELIAEPIDQPRNGG DSISVTIRFRPLSEREFQRGDEIAWSADGDKIVRNEYNPATAYAFDKVFGPHTASQEVYEVAAKPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPG IIPLAIKDVFSSIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIF TLMIESSAHGDEYDGVIFSQLNLIDLAGSESSKTETTGIRRKEGSYINKSLLTLGTVIGKLSEGRASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPAS SNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQKEISSLKQELDQLRHGMLAGVSHEEILSLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRL TKLILVSTKNTIPGLTDVPGHQPSHSVGEDDKSDVLREGALLAENENQKDSPSSASLIASDLTYEFKHRRSSSMWNEELSPASSTVTESTQSYELMGTSK LAPGGMTQDQMDLLVEQVKMLAGEIAFSTSTLKRLVEHSVNDPDNSKTQIQNLEREIWEKKRQMRVLEQRIIESGEASIANASLVDMQQTVMRLMTQCNE KAFELEIKSADNRILQEQLQNKCSENKELQDKVTLLEHRLASLSGDKASVNSEHNMSEEYVDELKKKVQSQEIENEKLKIGQVQISEENSGLRVQNQKLS EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESVHSRGAGMQSVNGVNRKFNDGIRHGRKGRFSGRGNDFSGMHSDDFESWNLDPDDLK RELQARKQREAALEAALAEKEFIEDEYRKKCEEAKKREGALENDLANMWVLVAKLKREDSAIFGMNADERHSDGIDHTSDPKTNGVEVDRNSILKEREDL DASQVDETPKEEPLVVRLKARIQEMKEKELKQLGNGDANSHVCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIADRLFAFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	0	1
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	2.44	0.9107	Pt-SPL7.2
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	2.82	0.9139
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	3.16	0.9142
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	4.58	0.8981
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Potri.010G003300 [exp]	5.47	0.8740
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	10.00	0.9028
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	10.72	0.8994
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	12.00	0.8987
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	14.00	0.8904	Pt-RIC2.2
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	14.83	0.8814

Compare expression of checked genes

Potri.004G161100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.