Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34640 658 / 0 ERG9, SQS1 squalene synthase 1 (.1) AT4G34650 632 / 0 SQS2 squalene synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123100 [exp] 749 / 0 AT4G34640 639 / 0.0 squalene synthase 1 (.1) Potri.005G205800 [exp] 42 / 0.0004 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 42 / 0.0005 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017499 [exp] 709 / 0 AT4G34640 676 / 0.0 squalene synthase 1 (.1) Lus10028786 [exp] 704 / 0 AT4G34640 671 / 0.0 squalene synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00494 [poplar] [flax] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Potri.004G161200.7 pacid=42795453 polypeptide=Potri.004G161200.7.p locus=Potri.004G161200 ID=Potri.004G161200.7.v4.1 annot-version=v4.1 ATGGGGAGTTTAGGAGCAATTTTGAAACACCCAGTTGACATATACCCATTGCTGAAGCTGAAAATGGCAGCTAAGCATGCTGAAAAACAGATCCCACGTG AACCTCACTGGGCTTTCTGTTATTCTATGCTCCCTAGAGTCTCTCGTAGCTTTGCTCTCGTTATCCAACAACTTGACACAGAACTCCGTAACGCTGTATG CGTATTTTATTTGGTTCTTCGAGCCCTTGACACTGTTGAGGATGATACAAGCATACCTACAGATGTCAAAGTGCCTATCCTGATAGCTTTTCACCGCCAC ATATATGATCATGACTGGCATTTCTCATGTGGTACCAAGGAGTACAAGGTTCTCATGGACCAGTTTCATAATGTTTCAAATGCTTTTCTGGAGCTTGGAA AAGGTTATCAGGAGGCAATCGAGGATATTACCAAAAGAATGGGTGCAGGAATGGCAAAGTTTATCTTGAAGGAGGTGGAAAGCATTGATGACTATGATGA ATATTGCCACTATGTAGCAGGACTTGTTGGACTGGGCCTGTCCAAACTCTTCCATGCATCTGGATTAGAAGATTTGGCACCAGATAGCATCTCCAATTCA ATGGGTTTGTTTCTTCAGAAAACAAACATTATTCGTGATTATTTGGAGGACATAAACGAGATACCTAAGTCACGCATGTTTTGGCCTCGCGAGATTTGGA GCAAATATGTCAACAAACTTGAGGACTTGAAATATGAAGAGAACTCGGTGAAGGCAGTGCAGTGCTTGAATGATATGGTTACCAATGCCTTGATACATAT GGATGATTGCTTGAAGTACTTGTCTGAATTGCGGGATCCTGCTATATTTCGGTTTTGTGCTATTCCTCAGATCATGGCGATTGGAACTCTAGCACTGTGC TACAACAATGTCAATGTCTTCAGAGGTGTAGTGAAGATGAGGCGAGGTCTTACCGCTCAAGTTATTCATCAAACGAAAACAATGGATGATGTCTATGGTG CTTTCTTCGACTTCTCTTGTATGCTGAAGTTCAAGGTTGACAACAGTGATCCTAATGCAATAAAAACCTTGAGCAGGCTGGAAGCAGCACAAAAATCTTG CAGGGAATCTGGGGCTCTAAACAAAAGGAAATCTTACATAATTAGGAATGAGCCAAAATATAATTCTGTTCTGATCGTCCTACTTTTCATTATATTGTCT ATTATTTTCGCGTATCTCTCTGCCAACAGATCGAGTTACTAG
AA sequence Show only first row Show all	>Potri.004G161200.7 pacid=42795453 polypeptide=Potri.004G161200.7.p locus=Potri.004G161200 ID=Potri.004G161200.7.v4.1 annot-version=v4.1 MGSLGAILKHPVDIYPLLKLKMAAKHAEKQIPREPHWAFCYSMLPRVSRSFALVIQQLDTELRNAVCVFYLVLRALDTVEDDTSIPTDVKVPILIAFHRH IYDHDWHFSCGTKEYKVLMDQFHNVSNAFLELGKGYQEAIEDITKRMGAGMAKFILKEVESIDDYDEYCHYVAGLVGLGLSKLFHASGLEDLAPDSISNS MGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALIHMDDCLKYLSELRDPAIFRFCAIPQIMAIGTLALC YNNVNVFRGVVKMRRGLTAQVIHQTKTMDDVYGAFFDFSCMLKFKVDNSDPNAIKTLSRLEAAQKSCRESGALNKRKSYIIRNEPKYNSVLIVLLFIILS IIFAYLSANRSSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	0	1
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	1.00	0.7445
AT5G09960			unknown protein		Potri.005G084700 [exp]	4.24	0.6476
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	4.69	0.6664
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	5.29	0.6449
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	24.33	0.6040
AT1G67060			unknown protein		Potri.004G098800 [exp]	26.45	0.6199
					Potri.009G094450 [exp]	30.51	0.5205
AT1G32120			unknown protein		Potri.001G132800 [exp]	31.08	0.5954
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.004G155600 [exp]	31.12	0.5612
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	31.85	0.6331

Compare expression of checked genes

Potri.004G161200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.