Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10550 659 / 0 Subtilase family protein (.1.2.3) AT4G10510 655 / 0 Subtilase family protein (.1) AT4G10520 646 / 0 Subtilase family protein (.1) AT1G32940 636 / 0 ATSBT3.5 Subtilase family protein (.1) AT1G32960 634 / 0 ATSBT3.3 Subtilase family protein (.1) AT4G10540 634 / 0 Subtilase family protein (.1) AT4G10530 618 / 0 Subtilase family protein (.1) AT1G32950 609 / 0 Subtilase family protein (.1) AT4G21650 605 / 0 Subtilase family protein (.1) AT4G21630 597 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450600 [exp] 757 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 756 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 708 / 0 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.011G151200 [exp] 705 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.001G002200 [exp] 608 / 0 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G455800 [exp] 544 / 0 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.011G146300 [exp] 535 / 3e-180 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.011G050000 [exp] 531 / 8e-179 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 529 / 5e-178 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035478 [exp] 998 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10016064 [exp] 519 / 3e-173 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 511 / 7e-171 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10007083 [exp] 511 / 2e-170 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 504 / 8e-168 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10002780 [exp] 500 / 3e-166 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10006505 [exp] 492 / 2e-163 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 485 / 1e-160 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 484 / 3e-160 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 481 / 3e-159 AT5G59810 839 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.004G161400.1 pacid=42794074 polypeptide=Potri.004G161400.1.p locus=Potri.004G161400 ID=Potri.004G161400.1.v4.1 annot-version=v4.1 ATGGCTTCTTTATGGAGCCCTGGAATTTTCCTTGCTCATGTTCTTGCTCTACTGTTGAAGGCTTTGCCCCTAGTGATTCTTGCTGAAACCAATGTTTACA TTGTGTATATGGGAGACAAACTCCATGACGAGCCTGAGCTGGTTCAAGAGTCCCATCATGAGCTTCTTGCTGATATTGTTGGAAGCAAAGACGCTGCAAA GGAATCGATTTTGTACAGCTACAAGCATGGATTTTCAGGATTCGCTGCCGTGTTAACCAAGTCCCAAGAGAAGCTTATTGCAGATTTCCCTGGAGTTGTT GGTGTTGTTCGAAACAGAATTATTAGTTCCCACACAACTAGGAGTTGGGATTTTCTACAAGTCAAGCCTCAACTTGTGGGTCGAATTTCCACGGGACATT CCGGGGCTGGTTCCATCATTGGTGTCATGGACACGGGTATATGGCCAGAGTCGAAAAGCTTCAGAGATGAGGGTATGGCAGAGGTGCCATCTCGTTGGAG AGGGATATGCCAAGAAGGAGAAGGATTTAATCGCTCGCATTGTAATAGGAAAATCATTGGTGCTCGCTGGTATATTAAAGGTTATGAAGCTGAATTTGGA AAGCTAAATACGAGTGATGGGGATGAGTTCCTATCTCCTCGAGACGCTGGGGGCCATGGCACCCACACATCATCTACTGCAACTGGTGGTCTAGTGGAAA ATGCAAGTTTTATGGGACTAGCTCAAGGATTGGCAAGAGGGGGTGCCCCATCAGCTTGGCTGGCTGTCTACAAAGTTTGCTGGGCTACAGGTGGCTGCGC TGAGGCAGATCTTCTTGCTGCATTTGATGATGCAATCTTTGATGGTGTGGATGTGCTATCAGTATCTCTTGGATCAGCACCTCCTCTTGCCACCTATGTT GAGGATGCAGTAGCTATTGGCTCCTTTTATGCTGTAGCTAAAGGAATTTCTGTAGTATGCTCTGCGGGGAATTCTGGTCCTTATCCTCAAACAATTACAA ATACAGCTCCATGGGTTGTTACTGTAGCAGCAAGCACCATTGATCGAGCTTTCCCTACTATAATTACCCTGGGGAACAATCAAACCATAGTGGGTCAGGC TTTGTATACGGGGAAGAATGTAGACACTTTCCACCCTATTGTTTATGGAGAAGAGATTGTAGCTGATGATTCTGATGAAGATAGTGCAAGAGGTTGTGCT TCAGGAAGCCTGAATGCTACTTTAGCAAGAGGAAAAGTGATTCTGTGTTTTGAGTCTCGGTCACAGAGGTCAAATATCATTGCTAGAAGAACTGTATTAG ATGTCAAGGGTGTTGGCCTTATATTTGCACAGTCTCCCACCAAGGATGTTACTTTGTCCTTGGACATTCCCTGTATCCAAGTGGACTTCGCAATAGGAAC ATATCTACTGACATACATGGAGTCAAGCAGAAATCCTGTAGTAAAGTTCAGCTTCACGAAAACAGTTATTGGGCAACAGATATCCCCGGAAGTTGCATTC TTCTCTTCTCGAGGACCCAGTTCCATCTCCGCTACTGTATTGAAGCCTGACATTGCTGCTCCAGGGGTTAACATCTTGGCCTCTTGGTCTCCTGCCGCTT CACCTGCCATAATTGACAATGAAGCACGGCCCTTGGACTTCAAAATTGAATCAGGAACATCCATGTCTTGCCCCCATATATCCGGTGTTGTTGCTCTACT TAAAGCTGCACATCCAAAATGGAGTCCTGCTACAATCAAGTCTGCACTAATCACAACAGCATCTATAGAGGACGAATATGGTCAAAAGACAGTCGCTGAA GGAGCTCCACACAAGCAGGCTGATCCATTTGATTATGGCGGTGGTCATGTTGATCCTGACAGAGCCATGGATCCTGGTCTCGTATTTGATATGGGCACCT CAGATTATATCCGCTTTCTTTGTGCCCTTGGCTACAATAATTCTGCAATCAGCTTAATGACCAGGACTCGCACCCGATGCAAGAAATCAACCACCTTTCT TGTAAATCTTAATTTGCCTTCTATTACCATTCCTGAGCTGAAGCAGAACTTAACTGTGTCGAGAACGGTCACAAATGTTGGTCCTATTACATCTATCTAC GTTGCTCGCGTTCTAGCTCCAGCCGGCACACGTGTGACAGTTGAGCCATCAGTTTTGTCATTTGATTCGACAAGAAAGAAGATCAAGTTTAAGGTAACCT TTTGTTCCATGTTGAGGATTCAAGGAAGATACTCATTCGGAAATCTGTTTTGGGAAGATGGCTTTCATGTAGTGAGAATTCCTTTGATAGTTAAAACTGT AATTGATGATTTCTATGCAGAAATATGA
AA sequence Show only first row Show all	>Potri.004G161400.1 pacid=42794074 polypeptide=Potri.004G161400.1.p locus=Potri.004G161400 ID=Potri.004G161400.1.v4.1 annot-version=v4.1 MASLWSPGIFLAHVLALLLKALPLVILAETNVYIVYMGDKLHDEPELVQESHHELLADIVGSKDAAKESILYSYKHGFSGFAAVLTKSQEKLIADFPGVV GVVRNRIISSHTTRSWDFLQVKPQLVGRISTGHSGAGSIIGVMDTGIWPESKSFRDEGMAEVPSRWRGICQEGEGFNRSHCNRKIIGARWYIKGYEAEFG KLNTSDGDEFLSPRDAGGHGTHTSSTATGGLVENASFMGLAQGLARGGAPSAWLAVYKVCWATGGCAEADLLAAFDDAIFDGVDVLSVSLGSAPPLATYV EDAVAIGSFYAVAKGISVVCSAGNSGPYPQTITNTAPWVVTVAASTIDRAFPTIITLGNNQTIVGQALYTGKNVDTFHPIVYGEEIVADDSDEDSARGCA SGSLNATLARGKVILCFESRSQRSNIIARRTVLDVKGVGLIFAQSPTKDVTLSLDIPCIQVDFAIGTYLLTYMESSRNPVVKFSFTKTVIGQQISPEVAF FSSRGPSSISATVLKPDIAAPGVNILASWSPAASPAIIDNEARPLDFKIESGTSMSCPHISGVVALLKAAHPKWSPATIKSALITTASIEDEYGQKTVAE GAPHKQADPFDYGGGHVDPDRAMDPGLVFDMGTSDYIRFLCALGYNNSAISLMTRTRTRCKKSTTFLVNLNLPSITIPELKQNLTVSRTVTNVGPITSIY VARVLAPAGTRVTVEPSVLSFDSTRKKIKFKVTFCSMLRIQGRYSFGNLFWEDGFHVVRIPLIVKTVIDDFYAEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10550			Subtilase family protein (.1.2...		Potri.004G161400 [exp]	0	1
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Potri.013G039600 [exp]	13.07	0.8148
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	19.89	0.7905
AT3G24255			RNA-directed DNA polymerase (r...		Potri.006G175124 [exp]	22.58	0.8275
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.002G139600 [exp]	23.23	0.8116
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	33.36	0.7581
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255900 [exp]	41.68	0.8123
					Potri.017G115002 [exp]	44.81	0.8158
AT2G23790			Protein of unknown function (D...		Potri.005G127800 [exp]	50.69	0.7358
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Potri.005G008050 [exp]	52.30	0.8069
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.002G055300 [exp]	55.31	0.7552

Compare expression of checked genes

Potri.004G161400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.