Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66320 179 / 1e-53 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 140 / 3e-39 GATA GATA6 GATA transcription factor 6 (.1) AT4G36240 135 / 6e-38 GATA GATA7 GATA transcription factor 7 (.1) AT5G25830 132 / 9e-36 GATA GATA12 GATA transcription factor 12 (.1) AT4G34680 129 / 2e-35 GATA GATA3 GATA transcription factor 3 (.1.2) AT4G32890 127 / 3e-34 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 125 / 5e-34 GATA GATA4 GATA transcription factor 4 (.1) AT3G24050 122 / 8e-33 GATA GATA1 GATA transcription factor 1 (.1) AT3G54810 123 / 1e-32 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT2G45050 120 / 7e-32 GATA GATA2 GATA transcription factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123400 [exp] 446 / 2e-158 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.005G117600 [exp] 206 / 2e-64 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.007G016600 [exp] 187 / 1e-56 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.001G188500 [exp] 145 / 4e-41 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.006G237700 [exp] 139 / 6e-38 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.003G174800 [exp] 130 / 5e-36 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.001G053500 [exp] 130 / 1e-35 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.002G142800 [exp] 128 / 4e-35 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.014G058600 [exp] 126 / 2e-34 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031096 [exp] 143 / 1e-42 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10041810 [exp] 137 / 7e-39 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2) Lus10011430 [exp] 133 / 3e-36 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10023684 [exp] 127 / 4e-35 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011762 [exp] 125 / 4e-34 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10028178 [exp] 125 / 6e-34 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10037572 [exp] 124 / 8e-33 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10038273 [exp] 124 / 9e-33 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10025829 [exp] 122 / 4e-32 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10016092 [exp] 120 / 6e-32 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G161500.2 pacid=42795267 polypeptide=Potri.004G161500.2.p locus=Potri.004G161500 ID=Potri.004G161500.2.v4.1 annot-version=v4.1 ATGGAGTTCTGCATGGAGACAAGGGCCTTGAAGTCAAGTTTACGCAACGAACTAGCTACAAAATCAACCCAACAAGCTATTTCTGAAGATTTCTTTGCTT TTAATGCATCTGCTGTTGTTTCAAGTGATCAAGATTTCTCTGTTGATTGTTTCTTGGACTTCTCTAATGGTGAATTCAAAGATGGTTATGCACAAGAAGA GGAAGAGAAAGACTCTCTTTCTGTTTCCTCTCAAGACCGTGTTGATGATGATTTTAACTCAAACTCCAGCAGCTTCTCCGATTCCTTTCTCTCAAGTGAA CTCGCTGTACCAACCGATGACATAGCAGAGCTTGAGTGGGTATCTCACTTTGTCAATGATTCTTTGTCTGATGTCTCTCTTCTGGTTCCTGCCTGTAAAG GAAAACCAGAAAGCCATGCAAAGAACCGGTTCGAACCAGAACCCAAACCCTCTCTCGCAAAAACTCCTGGTTTTTTCTCTCCACGGGTTCCCTCCAAGGC AAGAACCAAACGGTCCAGACGCACTGGTCGCACCTGGTCGGGTAGGTCGAACCAAACCGAGACACCGTCATCCTCAGCATCCTCAACCTCGTCAATGCCG TGTCTTGTTTCAGCCAACACGGTTCAAACAATTGACTCGTTATCGTGGTTGAGTGAACCGCCAATGAAAAAACCAAAGAAAAGACCGGCGGTTCAAACTA GTGGGATAACGGCGTCGCCCCAATTCCAGCGTCGGTGCAGTCATTGCCAGGTTCAGAAGACCCCGCAGTGGCGAACCGGGCCGCATGGTGCCAAAACGCT ATGTAATGCTTGTGGTGTTCGTTATAAATCCGGTCGACTCTTTCCGGAGTATAGACCAGCCTGCAGCCCTACCTTTTCGAGTGAAGTTCACTCGAATAGC CATCGAAAGGTGTTAGAGATGAGAAGGAAGAAGGAGATGGGCGGACCTGAATCCAGGTTGAACCAGATGGTTCCTAGTTTTTGA
AA sequence Show only first row Show all	>Potri.004G161500.2 pacid=42795267 polypeptide=Potri.004G161500.2.p locus=Potri.004G161500 ID=Potri.004G161500.2.v4.1 annot-version=v4.1 MEFCMETRALKSSLRNELATKSTQQAISEDFFAFNASAVVSSDQDFSVDCFLDFSNGEFKDGYAQEEEEKDSLSVSSQDRVDDDFNSNSSSFSDSFLSSE LAVPTDDIAELEWVSHFVNDSLSDVSLLVPACKGKPESHAKNRFEPEPKPSLAKTPGFFSPRVPSKARTKRSRRTGRTWSGRSNQTETPSSSASSTSSMP CLVSANTVQTIDSLSWLSEPPMKKPKKRPAVQTSGITASPQFQRRCSHCQVQKTPQWRTGPHGAKTLCNACGVRYKSGRLFPEYRPACSPTFSSEVHSNS HRKVLEMRRKKEMGGPESRLNQMVPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.004G161500 [exp]	0	1
AT2G30020			Protein phosphatase 2C family ...		Potri.001G278500 [exp]	2.00	0.8493
AT2G46940			unknown protein		Potri.014G111000 [exp]	5.19	0.8223
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	5.83	0.8522
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	8.48	0.8027
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	12.32	0.8007
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G033300 [exp]	17.17	0.8102
AT5G25240			unknown protein		Potri.006G190100 [exp]	18.76	0.7649
AT1G06870		Plsp2A	plastidic type I signal peptid...		Potri.014G036400 [exp]	20.39	0.8131
AT4G29905			unknown protein		Potri.008G007800 [exp]	22.00	0.7394
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	23.06	0.8015

Compare expression of checked genes

Potri.004G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.