Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16485 1050 / 0 nucleic acid binding;zinc ion binding;DNA binding (.1) AT3G51120 590 / 0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) AT2G18090 333 / 4e-97 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1) AT5G63700 199 / 2e-53 zinc ion binding;DNA binding (.1) AT5G08430 161 / 3e-41 SWIB/MDM2 domain;Plus-3;GYF (.1) AT5G23480 119 / 2e-27 SWIB/MDM2 domain;Plus-3;GYF (.1) AT2G14880 49 / 2e-06 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 49 / 2e-06 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 47 / 6e-06 SWIB/MDM2 domain superfamily protein (.1) AT3G19080 49 / 4e-05 SWIB complex BAF60b domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123800 [exp] 2205 / 0 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.007G016000 [exp] 780 / 0 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.005G117300 [exp] 758 / 0 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Potri.011G078050 [exp] 260 / 1e-71 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1) Potri.001G305900 [exp] 248 / 1e-70 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1) Potri.004G133600 [exp] 144 / 2e-35 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1) Potri.005G134500 [exp] 49 / 2e-05 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.002G262300 [exp] 49 / 3e-05 AT5G42950 714 / 0.0 GYF domain-containing protein (.1) Potri.001G297400 [exp] 46 / 3e-05 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018078 [exp] 1136 / 0 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10042072 [exp] 1129 / 0 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1) Lus10014271 [exp] 588 / 0 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025973 [exp] 396 / 1e-113 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10014272 [exp] 348 / 5e-99 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10025974 [exp] 348 / 2e-98 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10020897 [exp] 105 / 4e-23 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1) Lus10009333 [exp] 53 / 1e-06 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 53 / 2e-06 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10002106 [exp] 44 / 3e-05 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [poplar] [flax] GYF PF02213 [poplar] [flax] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Potri.004G161700.3 pacid=42795126 polypeptide=Potri.004G161700.3.p locus=Potri.004G161700 ID=Potri.004G161700.3.v4.1 annot-version=v4.1 ATGGAAACCGAAGAAGAAGAGAATTCAATAAACCCTTCCAGAAGTTCTATTGAACTCGAAAACGAATCTAATTTAACAACCACAATAACAACTACTACAA CAACAACAGACACGGAGTCTGTGGCCGAGTTGAACGAGTCGAACGCGTCTCAACTCGGTATTACTGATACCGATTTACTACAACAACAATCACAACCGCC ACAATCTCAAACAGAAACAACAGTTGTCGATATGAGCGATGCTCAGGATTTTGTTGTAGGCGACTCTGGATCGGTTTCTCCTCAACATTTGGTGATCGAG GGACGCGAAGGCGAGGAGGTCGCGGAGGCTACAGAGGGGAGTGGAGAGATTGAGGCACCGCGAGAGGTAGTTGAGAAAGAAGTGGAAAATAGAGATTTGG TTGCTAAAGAGGAGAGGAATGAGGATGTGAGCGGATATGCGAATGCTGGAAACAATGAAATGGACACCGAAACAGAGGGCGTTGCTGACGTGGCAGCGGA ATTAGAGACCGAGACATCGAGTCAGGAAGTAGAGGCAATGGAAGAGGAGGTAGCTGAAGCGAAAGAGGAATTGGCAGAGGATGAGAATACTGAGAATATG GAGAATGCGGATGTAGTGGAGGAGAAAAAAGAGGGTGCGGACGTGGTGGACAAGGTGGAGATGGATAGTGTGGTGAAGGAAACTAAAACTGTGAGGGTGA AGGAAGAAGAAGAGAGAGTGGATAATACGGAAATATATGGTGTGGGGGATGAAATGGAGGCGGTGGAGCAGAGGGAAATAACTGACGTTGTGGAGGAAGG GAAAGTGGAGAAGACAGAAGTTGTTGCTGATGTTGCAAGGGAAACGGAGGACGTGGAGCGGGTTGGAATGACTGAGATTGTGGAGGAAGAGAAGGCGGAG AAGATAGAAGTTAATGAGGAAAAGCAGTCAGCATTGCAGGTTGAAATGACAGACTTTGCAGAGGAAACGGGAGAGGATGAGAAAAATGAAATGACAGACA TTGCAGAGGAAATTAAGGTGGCAGGGCAATTAGAAACAACTGATGTTGCAGGAGGGACAGAGCAGGCTATTGACGAGGAAGGGGAAGCTATGGAGACAAA AATGATTGACGTGGCAGAGGAAGGTGATAAGGAAGAGGATACAGAAATGGATATGGCAGAGAAAGGGAATGAAGGAGATGATATGGCAGATGAAGCTGAA GGAGTGGGGGAGGGAGTTGAAGAAGTGGGTAGAAGTGGTGGTGGGAAGAGGAAGCGGGGAAAGAATGCTAAAACTCCCTCTAGAGCAACATCAAAGAAAA AGATGGAGGAGGATGTCTGTTTCATTTGTTTTGATGGAGGTGAACTTGTGCTGTGTGATCGCAGGGGTTGCTCTAAGGCTTATCATCCTTCTTGTGTTAA TCGAGATGAGGCTTTCTTTCGGGCAAAAGGTCGATGGAATTGTGGTTGGCATCTGTGTAGCAACTGTGTGAAGAATGCCTACTATATGTGCTATACGTGT ACCTTTTCCTTGTGCAAGGGATGCATTAAAGATGCTGTCATATTATGTGTAAGAGGTAACAAGGGCTTCTGTGAGACATGCATGAAAACTATCATGTTGA TTGAAAGGAATGAGCAAGGAAGCAAGGAAACGGTTCAAGTAGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGATTACTGGAATGATTTAAA AGAGAGGCTCTCTCTAACACCGGAAGAACTTGCTCAGGCTAAAAATCCATGGAAAGGTTCCGATTCACATACTGGAAAGCAGGAATTGGCTGATGAGCTT TATGATGTGCATAATGATGGAGGATCAGGATCAGACAGTTCTGCTGATGCAGAAGTCACCACCTCTAGAAGAAGGAAGCCTAAAAAACGGTTGAGGTCTC GTGCAAAGGAGAAGGATTCACCAGGCTCAGTATCATGGGCTGAAGGGGAATCAGCAGATGAAAGTGTTGAGTGGGCATCAAAGGAACTTTTGGAGTTTGT TATGCACATGAAGAATGGCGATAAATCTGCTTGTTCTCAATTTGATGTACAGGCTTTGCTGCTTGATTACATAAAAAGGAACAAACTTCGTGATCCTCGT CGCAAAAGTCAAATAATTTGTGATTCTAGGCTTGAGAATTTGTTTGGGAAACCACGCGTGGGGCATTTTGAAATGTTAAAGCTTCTTGAATCTCATTTTC TTTTGAAAGATGATTCGCAGGCAGATGATCTTCAAGGGAGTGTTGTTGACACTGAATCTAGTCAGTTGGAGGCTGATGGGAACTCTGATGCTCTTACGAA GGCAAGTAAGGATAAGCGACGAAAATCACGTAAAAAGGGTGAGGGGAGAGGACTGCAATCTAATATTGACGACTATGCAGCCATTAATATGCACAATATC AATTTGATTTATTTGCGACGTAGTCTTCTGGAAGATCTAATTGAAGATACTGAAGCTTTTCATGATAAAGCTGTCGGATCCTTTGTGAGAATAAGAATAT CCGGCAATGCTCAAAAGCAAGATTTATATCGGTTGGTCCAAGTTATAGGTACAAGCAAAGCTGCCGAGCCTTACAGAGTTGGCAAAAAGATGACTAGCTT TATGTTGGAAATATTAAATTTAAACAAGACAGAGCTTGTATCAATTGATATAATCTCAAATCAAGAATTCACAGAGGATGAGTGCAAGCGTCTGCGCCAG AGCATAAAATGTGGACTTATCAATCGGTTGACTGTGGGCGACATTCAGGAAAAGGCCATTGCAATCCAGGCAGTCAGAGTTCAGGATTCCTTGGAGTCAG AGATTACACGTCTCAGTCATCTCCGTGATCGAGCTAGTGATATGGGACACAGAAAGGAGCTTAGAGAATGTGTAGAGAAGTTGCAGCTTCTAAAAACACC TGAGGAGCGGCAGCGTAGATTGGAAGAAATTCCAGAAATACATGCAGACCCAAATATGGATCCAAGTCATGAATCAGATGAAGATGAAGGCGAGACAGAA GATAAGAGACAAGAGAACTCTCTCAGACCTAGAGGTAGTGGCTTTAGCAGGAAAGGGAGGGAGCCAATTTCCCCCCGAAAAGGAGGTTTTACTTCAAATG ATACCTGGGGTGGATCAAAAAGTTATTCAAGCACTAATCGGGAGCTAAGCAGAAACTTGTCTGATAAAGGTTTCTCAAGCAAAGGGGATGACATTGGAGG TGGTGAGTCTGTGAATGAGAATTTCTGGGGTCAAGGAAGAGAAAAACAAACACAGCAGTCCCAGAGTACTAATTCTACGGTAATATCAGAATCTGTTCCT GGGATTGCCCTAGAGATTTCACCTTCAACTCCATCTACAGTGGTCACACAATCTGCTTCCAAAGTGAATGAAGCGGAAAAAATATGGCACTATCAGGATC CATCTGGAAAAATTCAAGGACCATTTTCGATGGTGCAGCTGCGGAAATGGAGTAATACTGGATATTTTCCTGTTGATTTGAGGATATGGAGAAATACTGG GACGAAAGATGACTCCATACTTTTGACTGAAGCACTGTCTGGAAATTTCCAGAGAGACCCTCCAGCAGTGGACAATAGTTTCCTGAAGACTCAATTGGTT CAGAGTCCGCATCTACCATCGTCATTTACAGGGAATATAGCCCAAGCTGCTCCGGTTCCAGTTGAGGTCCCCAAGTACTCTACGGATAGGTGGGATTCTG GGACAAACCTGCCTTCTCCAACTCCAGGCCAAACAACCCCAAGTTTGACAAAGGGGCAAGTGTTTGAAAGCCAATGGTCACCAACTCCTGCTCAACCAGT GGGTTCTGCCTTAGGAGCCAATCAATCCTCAGGAGGCAATGTAGAACTGCAAGGTGCTACTGTTATCTCAGGGACTCCATCAAAAATGTCTCATGGAGTG AGCCCATTGCCCAAGTTAGAACCAGGCATGCTTTCAATTTCTTCAAATGGTCCTCAAATGCATTCTCAATCAACGTTGCCAGGTGAATCACCCAGGGTAC AGGTCAATTCCCATATGCATTCAGTACTTGATCCCAGTGGAACTTCAGTTAACGCAACTGTTGAAATGAGAAGTCTCCAGAACCTGGTTCAGCCGGGGAC TAGTGGTAACTCTCTTGTCGGGACACATGGATGGGGGGCAGGTTCAATTCCAAGGCCAGAAATGTATGCCTCACATGCAGTAACTGGGGCTGGATCTCAA GCATGGGGAAGTACCCAATCCCAGAAGCCAGAGGCAAATAATCTGGTTTTGATGCCCTCACAGCCCAGTGCTTATAGTAACTGGGGCAATGCACAAACCT CTGTCCGGAACCCCTCTTCATCCTTGACCACAGGAAATCCAAGTGGGGTTTCCCCCGTGCCAAGCACGGGCACCAATCCTTGGAGAGCTCCCGTTCCAGG ACCATCAAACATTCAACCTTCTGTTCCATCCAGCGGACCATGGGGCATGGGTATTACAGACAACCAAGGTGCTACTCCAAGGCAAGGGCCAGAAAACCAA AATACCAGTTGGGGACCAATTCCAGGAAATCAAAACATGGGCTGGGGAGTATCCTTACCTGCAAATTCAAATCAGGGGTGGGCTGTGCCTGGTCAGGTCC CATCAGCTGGAAATGTGAACCCTGGTTGGGGAGCTCCTGTCCAGGGACAAGCACCTGGAAATGCAAATCCTGCTTGGGGTGGTGCTCCTGTTCAGGGGCC AGCACCTGGAAATGCATTTTCAGGTTGGGGACCATCTGGTCAGGGGCCAGCACCAACAAATGCAAACACTGGTTGGGTACCACCCAGTCAAGGGCCACCA CCTCCTCCGAATGCAAATACAAATTGGTCAGTGCCTACTGGGAATGCAGGTACATGGGGAAGTGATGCAAATCAAAATGGAGATAGAGATAGGTTTTCGA GCCAAAGGGATAGAGGTTCTCATGGTGGAGATTCTGGTTATGGTGGAGGCAAGCCATGGAATAGGCAGTCATCATTTAACAGAAGCAGAGACTCCCCCAG GCCTCCATTTAAAGGGCAGAGAATCTGCAAATACCACCATGAACATGGGCATTGCAAAAAAGGAGCTTCATGTGATTATATGCATAATTGA
AA sequence Show only first row Show all	>Potri.004G161700.3 pacid=42795126 polypeptide=Potri.004G161700.3.p locus=Potri.004G161700 ID=Potri.004G161700.3.v4.1 annot-version=v4.1 METEEEENSINPSRSSIELENESNLTTTITTTTTTTDTESVAELNESNASQLGITDTDLLQQQSQPPQSQTETTVVDMSDAQDFVVGDSGSVSPQHLVIE GREGEEVAEATEGSGEIEAPREVVEKEVENRDLVAKEERNEDVSGYANAGNNEMDTETEGVADVAAELETETSSQEVEAMEEEVAEAKEELAEDENTENM ENADVVEEKKEGADVVDKVEMDSVVKETKTVRVKEEEERVDNTEIYGVGDEMEAVEQREITDVVEEGKVEKTEVVADVARETEDVERVGMTEIVEEEKAE KIEVNEEKQSALQVEMTDFAEETGEDEKNEMTDIAEEIKVAGQLETTDVAGGTEQAIDEEGEAMETKMIDVAEEGDKEEDTEMDMAEKGNEGDDMADEAE GVGEGVEEVGRSGGGKRKRGKNAKTPSRATSKKKMEEDVCFICFDGGELVLCDRRGCSKAYHPSCVNRDEAFFRAKGRWNCGWHLCSNCVKNAYYMCYTC TFSLCKGCIKDAVILCVRGNKGFCETCMKTIMLIERNEQGSKETVQVDFDDKSSWEYLFKDYWNDLKERLSLTPEELAQAKNPWKGSDSHTGKQELADEL YDVHNDGGSGSDSSADAEVTTSRRRKPKKRLRSRAKEKDSPGSVSWAEGESADESVEWASKELLEFVMHMKNGDKSACSQFDVQALLLDYIKRNKLRDPR RKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLLKDDSQADDLQGSVVDTESSQLEADGNSDALTKASKDKRRKSRKKGEGRGLQSNIDDYAAINMHNI NLIYLRRSLLEDLIEDTEAFHDKAVGSFVRIRISGNAQKQDLYRLVQVIGTSKAAEPYRVGKKMTSFMLEILNLNKTELVSIDIISNQEFTEDECKRLRQ SIKCGLINRLTVGDIQEKAIAIQAVRVQDSLESEITRLSHLRDRASDMGHRKELRECVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSHESDEDEGETE DKRQENSLRPRGSGFSRKGREPISPRKGGFTSNDTWGGSKSYSSTNRELSRNLSDKGFSSKGDDIGGGESVNENFWGQGREKQTQQSQSTNSTVISESVP GIALEISPSTPSTVVTQSASKVNEAEKIWHYQDPSGKIQGPFSMVQLRKWSNTGYFPVDLRIWRNTGTKDDSILLTEALSGNFQRDPPAVDNSFLKTQLV QSPHLPSSFTGNIAQAAPVPVEVPKYSTDRWDSGTNLPSPTPGQTTPSLTKGQVFESQWSPTPAQPVGSALGANQSSGGNVELQGATVISGTPSKMSHGV SPLPKLEPGMLSISSNGPQMHSQSTLPGESPRVQVNSHMHSVLDPSGTSVNATVEMRSLQNLVQPGTSGNSLVGTHGWGAGSIPRPEMYASHAVTGAGSQ AWGSTQSQKPEANNLVLMPSQPSAYSNWGNAQTSVRNPSSSLTTGNPSGVSPVPSTGTNPWRAPVPGPSNIQPSVPSSGPWGMGITDNQGATPRQGPENQ NTSWGPIPGNQNMGWGVSLPANSNQGWAVPGQVPSAGNVNPGWGAPVQGQAPGNANPAWGGAPVQGPAPGNAFSGWGPSGQGPAPTNANTGWVPPSQGPP PPPNANTNWSVPTGNAGTWGSDANQNGDRDRFSSQRDRGSHGGDSGYGGGKPWNRQSSFNRSRDSPRPPFKGQRICKYHHEHGHCKKGASCDYMHN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	0	1
					Potri.008G016200 [exp]	1.00	0.9427
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	1.73	0.9312
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	3.16	0.9337
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	3.46	0.9163
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	3.74	0.9106
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	4.24	0.8891
AT5G53440			unknown protein		Potri.015G014800 [exp]	4.89	0.9128
AT3G58110			unknown protein		Potri.013G119700 [exp]	5.09	0.8986
AT5G08450			unknown protein		Potri.004G135800 [exp]	5.47	0.8944
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	6.32	0.9089

Compare expression of checked genes

Potri.004G161700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.