Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75560 272 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT4G36020 77 / 3e-16 CSDP1 cold shock domain protein 1 (.1) AT3G42860 57 / 4e-09 zinc knuckle (CCHC-type) family protein (.1) AT3G43590 56 / 9e-09 zinc knuckle (CCHC-type) family protein (.1) AT2G17870 53 / 4e-08 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT5G52380 50 / 4e-07 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT2G12880 39 / 0.0004 Zinc knuckle (CCHC-type) family protein (.1) AT4G24390 41 / 0.0007 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234700 [exp] 332 / 6e-116 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.005G112800 [exp] 63 / 1e-11 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.007G057100 [exp] 61 / 6e-11 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.004G193500 [exp] 62 / 9e-11 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 56 / 1e-08 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.016G063800 [exp] 51 / 2e-07 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.015G144600 [exp] 50 / 4e-07 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.012G141700 [exp] 47 / 4e-06 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035477 [exp] 98 / 2e-26 AT1G75560 49 / 2e-08 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Lus10031093 [exp] 87 / 4e-20 AT1G75560 49 / 8e-07 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Lus10035476 [exp] 69 / 2e-14 AT1G75560 62 / 2e-12 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Lus10041902 [exp] 60 / 2e-10 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 59 / 4e-10 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10039230 [exp] 49 / 1e-06 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10027475 [exp] 47 / 4e-06 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10030560 [exp] 46 / 1e-05 AT3G42860 258 / 1e-82 zinc knuckle (CCHC-type) family protein (.1) Lus10008437 [exp] 45 / 3e-05 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 44 / 9e-05 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0511 [poplar] [flax] Retroviral_zf PF14392 [poplar] [flax] zf-CCHC_4 Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.004G161800.4 pacid=42794496 polypeptide=Potri.004G161800.4.p locus=Potri.004G161800 ID=Potri.004G161800.4.v4.1 annot-version=v4.1 ATGAGTTCTGACACTAGGAGCCAAAGCAGGAGCAGGAGCAGGAGCAGGAGCCCAATGGATCGTAGGATCCGCTCCGATCGCTTTTCCTATCGTGGTGCAC CTTACAGACGAGAGTCACGTCGGGGTTACAGCCAAAGCAATCTGTGCAAGAACTGCAAACGACCAGGTCATTATGCTAGAGAGTGCCCCAATGTGGCAAT TTGTCACAACTGTGGCCTTCCCGGGCATATTGCTTCAGAATGCACCACAAAATCCTTATGCTGGAACTGTCGGGAACCTGGGCACATGGCCAGCAATTGT CCAAATGAGGGAATCTGCCACACCTGTGGAAAGGCTGGGCATCGAGCTAAAGAGTGCACAGCTCCACCCATGCCACCTGGGGACTTGAGGTTATGCAACA ACTGCTATAAGCAGGGCCATATTGCAGCTGACTGTACAAATGACAAAGCATGCAACAACTGTAGGAAAACAGGTCACCTTGCACGTGAATGCCCCAATGA GCCTATTTGCAACATGTGCAATGTTGCTGGGCATGTAGCTAGGCAGTGCCCAAAATCAAACATGCTTGGAGATCGGGGAGGTATGCGCAGTGGTGGTTAC CAAGACATTGTATGCAGGAACTGCCACCAGTATGGACATATGAGCAGGGATTGCATGGGCCCCTTGATGATCTGTCACAACTGCGGGGGCCGAGGACACC GGGCAATTGAGTGCCCTTCTGGGAGGATGATGGACCGCTATCCACAGAGGTTCTACCGTTGA
AA sequence Show only first row Show all	>Potri.004G161800.4 pacid=42794496 polypeptide=Potri.004G161800.4.p locus=Potri.004G161800 ID=Potri.004G161800.4.v4.1 annot-version=v4.1 MSSDTRSQSRSRSRSRSPMDRRIRSDRFSYRGAPYRRESRRGYSQSNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASNC PNEGICHTCGKAGHRAKECTAPPMPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARECPNEPICNMCNVAGHVARQCPKSNMLGDRGGMRSGGY QDIVCRNCHQYGHMSRDCMGPLMICHNCGGRGHRAIECPSGRMMDRYPQRFYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75560			zinc knuckle (CCHC-type) famil...		Potri.004G161800 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183000 [exp]	4.79	0.7989
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Potri.010G119600 [exp]	15.74	0.7534
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	17.02	0.7905
					Potri.009G080100 [exp]	18.16	0.7413
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.017G014400 [exp]	18.33	0.7586
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137350 [exp]	20.49	0.7622
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.010G104300 [exp]	24.08	0.7626	Pt-HSF5.1
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.014G097100 [exp]	25.80	0.7524
AT3G52040			unknown protein		Potri.009G056800 [exp]	26.94	0.7681
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.002G099700 [exp]	29.59	0.7610

Compare expression of checked genes

Potri.004G161800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.