Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39010 703 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 575 / 0 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G70710 566 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 553 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 544 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 542 / 0 ATCEL2 cellulase 2 (.1) AT1G22880 487 / 1e-169 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 479 / 2e-166 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G23560 425 / 3e-145 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 424 / 4e-145 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123900 [exp] 867 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 575 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 569 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 553 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 549 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 531 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.015G127900 [exp] 519 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 502 / 2e-175 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 493 / 9e-172 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042071 [exp] 706 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10018077 [exp] 706 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10031090 [exp] 652 / 0 AT4G39010 614 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10029071 [exp] 560 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 548 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 524 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10027205 [exp] 508 / 1e-177 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10034199 [exp] 504 / 3e-176 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 503 / 1e-175 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10025880 [exp] 481 / 1e-167 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.004G162200.1 pacid=42795389 polypeptide=Potri.004G162200.1.p locus=Potri.004G162200 ID=Potri.004G162200.1.v4.1 annot-version=v4.1 ATGAAGAACCTCTCTCCTCCCCATTACGCTCTTCTTTTCACTGCACTGCTCGCTCAATTACCGCTGTTTCAGTCAAGCTACCACGAGTACCAAGATGCAT TATCAAAGTCCATTCTTTTCTTCGAGGGTCAAAGGTCAGGCTATTTGCCACAAGACCAACGCGTAACTTGGCGTGCTAATTCAGGCCTAAGTGATGGGTG GACATATAATACAGACCTGACTGGTGGCTACTATGATGCCGGTGATAATGTCAAGTTTGGCTTCCCCATGGCATTCACAACTACAATGTTGGCGTGGAGT GTGAATGAATTTGGAGACTTAATGCCTCCGAATGAGTTGAGAAACAGCTTAGTTGCCATTCGTTGGGCCACCGATTATCTGCTCAAGACTGTTTCTCAGC CTAACCGGATTTTTGTTCAGGTGGGGGATCCAAATGGAGACCATATTTGCTGGGAAAGACCAGAGGACATGGATACTCCTAGGGTTGTTTACGCTGTGGA TGCTCCAAACCCGGCATCTGATGTTGCCGGTGAGACTGCGGCAGCCTTGGCAGCTTCATCTATGGCATTTCGATCGTCGGACCCGGGATATGCAGAAACA TTACTAAGAAACGCCATTAATGCCTTCCAATTTGCTGATAGTTACAGAGGAGCTTATAGTGACAACTCCAATATTAAAGATGGTGCATGCCCATTCTATT GCGATTTTGATGGTTATCAAGATGAGTTGCTATGGGGAGCAGCATGGCTTAGGAGGGCATCTTACGATGACACTTACCTTAGTTTCTTACAAAACAATGG GGAGACCCTGGGAGCTGATGAAAATATTAATGAATTTGGGTGGGACAACAAGCATGCTGGCCTTAATGTTCTTGTCTCAAAGGAAGTTCTAGAAGGAAAC ATGAACTCTCTCCAGTCATACAAAGAATCAGCTGATAGCTTCATGTGCACCCTCATACCTGAATCATCATCCTCTCACGTAGAATACACTCCCGGTGGCC TAATCTACAAGCCAGGAGGCAGCAACCTGCAGCATGCAACAACGATCTCATTTTTGCTACTTGCTTATGCAAATTACCTGGAAAGAACATCGCAATCTGT CAATTGTGGAAATGTAAATGTCGGTCCATATTCACTTCGGCAACAGGCTAAGAGGCAAGTTGATTACATTTTAGGAGATAACCCTTTGGGATTGTCTTAT ATGGTCGGATATAGCGACCATTATCCTCAACGGATTCATCACCGTGGGTCATCGTTGCCGTCGGTTAAGGATCATCCTGATCTTATAGCTTGCAAAGAAG GTTCAATCTACTGCAATTCATCAAACCCTAACCCTAACGTTCATGTTGGGGCTATTGTGGGTGGACCTAGCGAAGATGATTCATACGAAGATAGTCGAGA TGATTTTAGAAAATCCGAGCCAACAACGTATATTAATGCACCATTTGTTGGTGTGCTTGCTTATTTTGCAGCAAATCCCAGTTTTAGTTGA
AA sequence Show only first row Show all	>Potri.004G162200.1 pacid=42795389 polypeptide=Potri.004G162200.1.p locus=Potri.004G162200 ID=Potri.004G162200.1.v4.1 annot-version=v4.1 MKNLSPPHYALLFTALLAQLPLFQSSYHEYQDALSKSILFFEGQRSGYLPQDQRVTWRANSGLSDGWTYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWS VNEFGDLMPPNELRNSLVAIRWATDYLLKTVSQPNRIFVQVGDPNGDHICWERPEDMDTPRVVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYAET LLRNAINAFQFADSYRGAYSDNSNIKDGACPFYCDFDGYQDELLWGAAWLRRASYDDTYLSFLQNNGETLGADENINEFGWDNKHAGLNVLVSKEVLEGN MNSLQSYKESADSFMCTLIPESSSSHVEYTPGGLIYKPGGSNLQHATTISFLLLAYANYLERTSQSVNCGNVNVGPYSLRQQAKRQVDYILGDNPLGLSY MVGYSDHYPQRIHHRGSSLPSVKDHPDLIACKEGSIYCNSSNPNPNVHVGAIVGGPSEDDSYEDSRDDFRKSEPTTYINAPFVGVLAYFAANPSFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.004G162200 [exp]	0	1
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.003G056900 [exp]	2.00	0.9600	AUX22.3
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.006G125600 [exp]	4.47	0.9502	Pt-ROT4.1
AT4G14380			unknown protein		Potri.008G167200 [exp]	5.19	0.9502
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102301 [exp]	5.29	0.9738
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Potri.016G098600 [exp]	10.81	0.9247	XTH32.2
					Potri.003G076700 [exp]	11.31	0.9138
AT2G29125		RTFL2, DVL13	DEVIL 13, ROTUNDIFOLIA like 2 ...		Potri.009G034300 [exp]	19.02	0.8913
AT4G13440			Calcium-binding EF-hand family...		Potri.019G029100 [exp]	20.49	0.9215
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Potri.008G211800 [exp]	21.90	0.9224
AT5G62680			Major facilitator superfamily ...		Potri.001G376966 [exp]	27.05	0.8584

Compare expression of checked genes

Potri.004G162200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.