Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08350 1395 / 0 GTA2, GTA02 global transcription factor group A2 (.1) AT2G34210 1143 / 0 Transcription elongation factor Spt5 (.1) AT5G04290 222 / 6e-59 SPT5L, KTF1 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) AT4G08360 119 / 3e-31 KOW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124200 [exp] 1774 / 0 AT4G08350 1372 / 0.0 global transcription factor group A2 (.1) Potri.008G032800 [exp] 251 / 2e-68 AT5G04290 635 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.010G228766 [exp] 236 / 3e-67 AT5G04290 606 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018928 [exp] 1407 / 0 AT4G08350 1358 / 0.0 global transcription factor group A2 (.1) Lus10028630 [exp] 1406 / 0 AT4G08350 1357 / 0.0 global transcription factor group A2 (.1) Lus10038680 [exp] 245 / 2e-66 AT5G04290 727 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10037946 [exp] 245 / 2e-66 AT5G04290 731 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [poplar] [flax] KOW PF00467 [poplar] [flax] KOW KOW motif CL0439 [poplar] [flax] NusG-like PF03439 [poplar] [flax] Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section CL0439 [poplar] [flax] PF11942 [poplar] [flax] Spt5_N Spt5 transcription elongation factor, acidic N-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G162500.2 pacid=42794611 polypeptide=Potri.004G162500.2.p locus=Potri.004G162500 ID=Potri.004G162500.2.v4.1 annot-version=v4.1 ATGTCTCGTCGAAGAGACGAAGACGACGACCTTGAAGATGAAGAGTATGAGGAGCAGGAAGAGCAAGTAATGGATGAAGAAGAGGAGGAATATTATGAGG GTGAAGAAGAGGAAGATATAGGAGCGTCGATTAAGAAGAGACGGAGATCAGATTTCTTTGATGATATTGCGGAGGAGGAGGAGGAGGAAGAGGAAGATGA GGATGATGAGGATTATGGTGGTGGTGGTGGTGGTGGAGGAGGTGGTGGTGGTAGGAAGCAGAAGGGGAAGAAGCGGCGTGGCTCAGAGTTTTTTGATGAT ATTGCTCAAGTTGCCAGTGATGACGAGGAGGATGAAGATGATGGCGAGGACGATTTTATAGTTGACGATCACGGAGCTGATTTACCTGATGAGGGTAGTG GTAGAAGGATGCATCGTAGGCCGTTACTGCCTGCAGAAGAGGATCAAGAAGATGTTGAAGCACTTGAGAGAAGTATTCAAGCAAGATATGCAAAGTCAAT GCACTCAGAATATGATGAAGAGACTACGGAAGTGGAGCAACAAGCTCTTTTGCCATCTGTTCGGGATCCGAAATTATGGATGGTTAAGTGTGCGATTGGC CGTGAACGGGAGACGGCTGTTTGTTTAATGCAAAAATACATTGATAAAGGATCGGAGTTGCAAATTCGGTCTGCTATTGCTCTTGATCATCTTAAAAACT ATATATATATTGAAGCAGACAAAGAAGCCCATGTGAGAGAGGCTTGTAAAGGCTTGCGCAATATTTTTGGGCAGAAAATCATGCTTGTTCCAATCAAAGA AATGACTGATGTTCTTTCAGTTGAAAGCCAAGTGATTGATCTTTCAAGGGACACCTGGGTCAGAATGAAGATTGGGAATTACAAAGGGGACCTTGCCAAA GTTGTAGATGTAGATAATGTCCGGCAGAGAGTTACAGTAAAGTTAATTCCAAGGATTGACTTGCAGGCTCTTGCAAACAAACTGGAAGGCAGAGAAGCGC CAAAAAAGAAGGCATTTGTACCTCCTCCACGTTTTATGAATGTTGAAGAAGCTAGGGAATTACATATTCGTGTAGAACGCAGAAGAGATCCAATGACCGG TGATTATTTTGAAAATATTGGCGGGATGCTTTTTAAAGATGGTTTCTTGTATAAAACTGTATCAATGAAGTCAATTAGTGCTCAGAACATTAAGCCATCA TTTGATGAGCTTGAGAAGTTTCGTACACCTGGAGAGAATGGAGATGGTGATATTGCCAGTTTGTCAACCTTGTTTGCAAACAGAAAGAAGGGCCATTTTA TGAAGGGTGATGCAGTTATTGTTGTCAAGGGAGATCTGAAAAATCTAAAGGGATGGGTTGAGAAAGTTGATGAAGAAAATGTACATATTAGACCTGAAAT GAAGGGTCTTCCGAAAACACTTGCAGTAAATGAAAAGGAATTGTGCAAGTATTTTGAACCTGGCAATCACGTGAAGGTTGTCTCAGGCACACATGAAGGT GCAACTGGCATGGTTGTTAAGGTTGAGCAGCATGTGCTCATTATTCTGTCTGATACAACAAAGGAACATATCCGTGTATTTGCTGATGATGTTGTGGAAA GTTCTGAGGTAACTACAGGAGCTACCAACATTGGGGGCTATGAGCTTCACGATCTTGTGCTGTTGGATAATATGAGCTTCGGTTTAATTATTCGTGTAGA AAGTGAAGCCTTTCAGGTTCTCAAGGGAGTTCCAGAGAGACCTGATGTTGCACTTGTTAGACTGAGAGAGATCAAATGCAAAATTGAGAAGAAAACCAAT GTCCAAGATCGGTACAAGAACACTGTATCTGTGAAAGATGTTGTTAGGATCATTGATGGTCCTTGCAAAGGAAAACAAGGTCCTGTAGAACACATATATA GAGGAGTTCTGTTCATCTATGATCGGCATCACCTTGAGCATGCTGGGTTTATTTGTGCTAAATCCCATTCCTGTGTGGTTGTTGGAGGATCACGTTCCAA TGGAGATAGAAATGGTGATTCCTATTCAAGATTGAGCAGTTTTAAAACTCCTCCCCGAGTACCCCCGTCACCAAAGAGATTTTCTAGAGGAGGTCCTCCA TTTGAGTCTGGAGGAAGAAATAGAGGTGGACGGGGAGGGCATGATGCTTTGGTTGGTACCACAATAAAGGTACGACAGGGTCCTTTCAAGGGTTACCGTG GGCGTGTTGTAGATATCAAAGGTCAACTTGTTAGAGTTGAACTGGAATCACAAATGAAAGTTGTTACAGTTGATCGGAGCCACATCTCAGATAATGTGGT TGTTTCAACTCCATACCGCGATACACTTCGATATGGTATGGGAAGTGAAACCCCAATGCATCCTTCTCGGACTCCATTGCGTCCATACATGACACCAAAG AGAGATGCTGGAGCGACACCTATTCATGATGGCATGAGGACACCTATGCGTGATCGGGCCTGGAATCCTTATGCACCAATGAGTCCTCTGAGGGATAATT GGGAAGATGGGAATCCTGGGTCTTGGGGAACCAGTCCGCAGTATCAGCCAGGAAGCCCTCCCTCTGGAACATATGAAGCTCCAACTCCTGGTTCAGGCTG GGCTAGCACTCCTGGTGGTAATTATAGTGAAGCTGGAACACCAAGAGATAGCAGTTCTGCCTATGCCAATGCTCCAAGCCCATACCTGCCATCAACTCCT GGCGGCCAGCCTATGACACCTGGCTCAGCATCCTACCTCCCTGGCACTCCTGGAGGGCAACTAATGACACCTGGAACTAATGGTCTTGATATGATGTCTC CTGTTATAGGTGGAGATGGTGAAGGACCATGGTTCATACCCGACATATTGGTGAACGTACACAGGACCACAGATGAACCGACTGTTGGTATCATCAGGGA GGTGCTTCAGGATGGCTCTTGTAAAATAGCCCTTGGGGCAAATGGCAACGGCGAGACATTAACTGCTCTTCCTAGTGAAATTGAGATAGTAGTGCCTAGG AAATCAGACAAGATCAAGATCTTGGGTGGTGCACATCGTGGTGTTACTGGCAAGTTAATTGGTGTGGATGGCACTGATGGAATTGTAAAGTTGGAGGACA CTCTTGATGTTAAGATATTAGACATGGCCATACTAGCTAAACTTGCACAAATGTGA
AA sequence Show only first row Show all	>Potri.004G162500.2 pacid=42794611 polypeptide=Potri.004G162500.2.p locus=Potri.004G162500 ID=Potri.004G162500.2.v4.1 annot-version=v4.1 MSRRRDEDDDLEDEEYEEQEEQVMDEEEEEYYEGEEEEDIGASIKKRRRSDFFDDIAEEEEEEEEDEDDEDYGGGGGGGGGGGGRKQKGKKRRGSEFFDD IAQVASDDEEDEDDGEDDFIVDDHGADLPDEGSGRRMHRRPLLPAEEDQEDVEALERSIQARYAKSMHSEYDEETTEVEQQALLPSVRDPKLWMVKCAIG RERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYIEADKEAHVREACKGLRNIFGQKIMLVPIKEMTDVLSVESQVIDLSRDTWVRMKIGNYKGDLAK VVDVDNVRQRVTVKLIPRIDLQALANKLEGREAPKKKAFVPPPRFMNVEEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIKPS FDELEKFRTPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNEKELCKYFEPGNHVKVVSGTHEG ATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGATNIGGYELHDLVLLDNMSFGLIIRVESEAFQVLKGVPERPDVALVRLREIKCKIEKKTN VQDRYKNTVSVKDVVRIIDGPCKGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKSHSCVVVGGSRSNGDRNGDSYSRLSSFKTPPRVPPSPKRFSRGGPP FESGGRNRGGRGGHDALVGTTIKVRQGPFKGYRGRVVDIKGQLVRVELESQMKVVTVDRSHISDNVVVSTPYRDTLRYGMGSETPMHPSRTPLRPYMTPK RDAGATPIHDGMRTPMRDRAWNPYAPMSPLRDNWEDGNPGSWGTSPQYQPGSPPSGTYEAPTPGSGWASTPGGNYSEAGTPRDSSSAYANAPSPYLPSTP GGQPMTPGSASYLPGTPGGQLMTPGTNGLDMMSPVIGGDGEGPWFIPDILVNVHRTTDEPTVGIIREVLQDGSCKIALGANGNGETLTALPSEIEIVVPR KSDKIKILGGAHRGVTGKLIGVDGTDGIVKLEDTLDVKILDMAILAKLAQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.004G162500 [exp]	0	1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	4.47	0.7781
AT5G19950			Domain of unknown function (DU...		Potri.018G073100 [exp]	18.73	0.7150
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	18.81	0.7675
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Potri.019G049400 [exp]	24.49	0.7537
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	26.26	0.6608
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	27.05	0.7570
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	33.49	0.7269
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	35.21	0.7443
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	37.58	0.7430
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	37.74	0.7293

Compare expression of checked genes

Potri.004G162500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.