Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21270 487 / 6e-175 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 457 / 3e-163 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G29070 387 / 2e-135 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 112 / 2e-27 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124900 [exp] 560 / 0 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 399 / 4e-140 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.014G156300 [exp] 107 / 6e-26 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018057 [exp] 511 / 0 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 444 / 2e-157 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 334 / 3e-114 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 258 / 5e-85 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 187 / 1e-55 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10031538 [exp] 116 / 6e-29 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 114 / 4e-28 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [poplar] [flax] Cdc48_2-like PF03152 [poplar] [flax] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Potri.004G163200.5 pacid=42796724 polypeptide=Potri.004G163200.5.p locus=Potri.004G163200 ID=Potri.004G163200.5.v4.1 annot-version=v4.1 ATGCAGTTTTTCGATGGATATGGATATCGCGGGACATCGTTTGAGCAGACATATCGATGTTACCCTGCTTCATTTATTGAAAAGCCACAAATTGAAAGCG GTGATAAAATTATAATGCCTCCCTCAGCTCTTGACCGTCTTGCATCTCTGCATATAGATTATCCAATGTTGTTTGAGCTTCGGAATGCTGCTGCGGAGCG GGTGTCTCACTGTGGGGTTCTGGAGTTTATTGCAGAGGAAGGCATGATTTATATGCCATACTGGATGATGGAGAACCTGCTTCTACAAGAGGGAGATATA GTGCGAGTGAAAAATGTTACTCTTCCCAAGGGAAAATATGTTAAACTGCAACCTCACACAAAGGACTTTTTGGATATATCCAACCCAAAAGCTATCTTAG AGACAACATTAAGGAATTATTCCTGCTTAACCACTGGGGATAGTATTATGGTGGCATATAACAACAAGAAATACTACATAGATATTGTGGAAACAAAGCC ATCAAATGCAATAAGTATCATTGAGACGGACTGTGAGGTGGACTTTGCACCTCCCCTGGATTACAAGGAGCCTGAAAAGCCTGTTGCATCTGTTCCTCCA AGCAAGGCAACCTCCCAAGCTGAAGAGGTTCCAGCTGAGACTGAACCAAAATTCAACCCCTTTACGGGAACAGGTAGACGCTTGGATGGGAAACCAATGA GCTATCAGCCCCCACCAGTTTCATCAGGGTCTAAAGACAAGCGACCTGCTGTTGCCAATGACAGCAGGCAGCCTTCTCTCGGATCTATTTCAAAAAATAC TGCACGCCAGTCTCAGGGAAAGCTTGTGTTTGGGTCAAATGCAAGTCGCTCTCCTAAGGAAACACAGCAGGGAGCTGGAAAAGAGACCAAACAAGAGCAG CCCAAAAAGGAAGAACGGCCAAAATTCCAGGCATTCTCAGGGAAAAAGTACTCATTGAAGGGTTGA
AA sequence Show only first row Show all	>Potri.004G163200.5 pacid=42796724 polypeptide=Potri.004G163200.5.p locus=Potri.004G163200 ID=Potri.004G163200.5.v4.1 annot-version=v4.1 MQFFDGYGYRGTSFEQTYRCYPASFIEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNAAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDI VRVKNVTLPKGKYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKEPEKPVASVPP SKATSQAEEVPAETEPKFNPFTGTGRRLDGKPMSYQPPPVSSGSKDKRPAVANDSRQPSLGSISKNTARQSQGKLVFGSNASRSPKETQQGAGKETKQEQ PKKEERPKFQAFSGKKYSLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	0	1
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	3.60	0.9043
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	5.83	0.8719	Pt-SEC14.2
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	8.30	0.8668
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.010G201500 [exp]	8.48	0.8439
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	10.39	0.8588
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	14.14	0.8545
AT2G12400			unknown protein		Potri.006G060600 [exp]	14.28	0.7812
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	16.73	0.8352
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Potri.003G183700 [exp]	17.77	0.7255	J8.2
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Potri.007G006900 [exp]	19.89	0.8184

Compare expression of checked genes

Potri.004G163200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.