Plant FIBer expression Database

Pt-SPE1.1 (Potri.004G163300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-SPE1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34710 989 / 0 SPE2, ADC2, ATADC2 arginine decarboxylase 2 (.1.2)
AT2G16500 959 / 0 SPE1, ARGDC1, ADC1 arginine decarboxylase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031079
[exp]
1032 / 0 AT4G34710 1040 / 0.0 arginine decarboxylase 2 (.1.2)
Lus10035464
[exp]
563 / 0 AT4G34710 571 / 0.0 arginine decarboxylase 2 (.1.2)
Lus10035463
[exp]
0 / 1 AT4G34710 167 / 4e-84 arginine decarboxylase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00278 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain
CL0036 TIM_barrel PF02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Representative CDS sequence
>Potri.004G163300.1 pacid=42796205 polypeptide=Potri.004G163300.1.p locus=Potri.004G163300 ID=Potri.004G163300.1.v4.1 annot-version=v4.1
ATGCCTGCCCTGGCTTGTTGCGTTGATGCTGCGCATGCGCCTCCCGGCTACGCTTTTCCTGCCGGGGATAGCTCTCTTCCGTTCCCGGTGCCATGTTCGC
CGGGCGTACCTCTTTCAACAACCTCCACCCATACCGCCGCCGCCTCTGAAAATTCCTCTGCCCATTGGTCACCTTCCCTCTCTGCCGCGCTTTACAAAAT
CGATGGCTGGGGTGCTCCGTATTTCTCTGTGAATTCCTCCGGCAATGTTTCCGCCCGTCCTTACGGTACGGACACGCTGCCTCACCAGGAGATTGATTTG
CTAAAAATAGTGAAGAAAGTTTCGGATCCAAAATGGGTTGGTGGGCTGGGGCTCCAGCTCCCAGTAATTGTTCGCTTGCCTGACGTGCTTAAAAACAGGC
TCGAATCTCTGCAGTCTGCTTTTGATTTCGCAATCCAGTCTCAGGTCTACGAGGCTCATTACCAAGGTGTTTATCCTGTGAAATGTAACCAGGATCGGTT
TGTTGTTGAAGATATTGTGAGATTCGGGTCCCCGTTCCGGTTCGGGTTGGAAGCTGGGTCAAAACCCGAGCTTCTCTTAGCTATGAGCTGTTTGTGCAAG
GGAAACCCGGAAGCGCTCTTGATTTGTAATGGGTTCAAAGATGGAGAGTACATTTCTCTCGCGTTGATTGCGAGGAAACTCGCTTTGAATACAGTGATTG
TGCTTGAACAAGAAGAAGAGATTGACCTGGTTATTGAGCTGAGCAAGAAAATGTCTGTTAGGCCTGTGGTTGGTGTTCGAGCAAAGCTGAGGACAAAACA
TTCGGGTCATTTCGGGTCCACTTCAGGTGAGAAAGGGAAATTCGGGTTAACTACGACCCAGATTTTGCGGGTCGTGAAGAAGCTTGAACAAGCAGGAATG
CTTGATTGTTTCCAGCTGCTGCATTTCCATATTGGATCTCAGATCCCCTCTACATCCTTGCTTGCTGATGGTGTAAGCGAGGCTGCGCAGATCTACTGTG
AATTAGTCCGTCTTGGTGCTCGTATGCAAGTCATTGACATTGGAGGTGGGCTTGGTATCGATTATGACGGGTCTAAATCTGGTAATTCGGATCTTTCCGT
GGCATATGGGCTTGAAGAGTATGCTCTAGCTGTCGTGCAAGCTGTCAAGTTTGTCTGTGACCGTAAGAATGTTAAGCATCCAGTGATTTGCAGCGAAAGC
GGGCGTGCTATTGTTTCTCACCACTCAATTTTGATATTTGAGGCTATATCTTCAAGCTCGACTAGTGCTGCGTCAATGACTTCGTATGAAATGCAGTATT
ATCTTGGCGGGCTTACTGAGGATGCTCGTGCTGATTACCGGAACTTAACTGCTTCAGCAATAAGAGGTGAGCATGAGGCCTGCTTGTTGTACGCTGATCA
ATTGAAACAAAGTTGCGTTGATCAGTTTAAAGAAGGAAATATTGGTATGGAACAATTAGCTGCTGTTGATGCATTGTGTGAATTGTTCTATAAAACCATT
GGTGCATCTGATCCAGTTCGCACTTATCATGTGAATTTGTCTCTGTTTACTTCAATTCCTGATTTCTGGGGGATTGGACAGTTGTTTCCAATAGTCCCTA
TTCATCGACTTGATCAAAGGCCTGGCGCGAGAGGAATTTTGTCTGATCTAACATGTGATAGTGATGGGAAGATTGATAAGTTCATAGGTGGTGAGTCCAG
CTTGCCACTTCATGAAATTGAAGGTGGTGGTGCCGGTGGTAATGGTGGGAAGTATTACTTGGGGATGTTTTTGGGCGGGGCTTATGAGGAGGCGCTCGGT
GGAATTCACAACCTGTTCGGTGGCCCTAGCGTCGTGCGGGTTTCACAGAGTGATGGGCCACACAGCTTCTTAGTCACGCAAGCTGTGCCTGGCCCGTCAT
GTGGTGATGTCCTCCGAGTTATGCAGCACGAGCCTGAGCTCATGTTCGAGACCCTGAAGCACCGCGTCGAAGAATATTGTCACCATGATGAGGATAGCGA
TGATGGTGATAGCGATCATGGAATGGGAAGCATTGCTAGTTTAGCCAACAGACTTGCTAGCTACTTCCATAACATGCCTTATCTGGTGGCTCCTTGTTCA
GTTACTGCTATGAATAATAGTGGCTTCTACTACTGCAACGAGGATGATTACAATGCTGCTGCTGATACTTCTCCCTGCGAGGATGAGAAGTGA
AA sequence
>Potri.004G163300.1 pacid=42796205 polypeptide=Potri.004G163300.1.p locus=Potri.004G163300 ID=Potri.004G163300.1.v4.1 annot-version=v4.1
MPALACCVDAAHAPPGYAFPAGDSSLPFPVPCSPGVPLSTTSTHTAAASENSSAHWSPSLSAALYKIDGWGAPYFSVNSSGNVSARPYGTDTLPHQEIDL
LKIVKKVSDPKWVGGLGLQLPVIVRLPDVLKNRLESLQSAFDFAIQSQVYEAHYQGVYPVKCNQDRFVVEDIVRFGSPFRFGLEAGSKPELLLAMSCLCK
GNPEALLICNGFKDGEYISLALIARKLALNTVIVLEQEEEIDLVIELSKKMSVRPVVGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEQAGM
LDCFQLLHFHIGSQIPSTSLLADGVSEAAQIYCELVRLGARMQVIDIGGGLGIDYDGSKSGNSDLSVAYGLEEYALAVVQAVKFVCDRKNVKHPVICSES
GRAIVSHHSILIFEAISSSSTSAASMTSYEMQYYLGGLTEDARADYRNLTASAIRGEHEACLLYADQLKQSCVDQFKEGNIGMEQLAAVDALCELFYKTI
GASDPVRTYHVNLSLFTSIPDFWGIGQLFPIVPIHRLDQRPGARGILSDLTCDSDGKIDKFIGGESSLPLHEIEGGGAGGNGGKYYLGMFLGGAYEEALG
GIHNLFGGPSVVRVSQSDGPHSFLVTQAVPGPSCGDVLRVMQHEPELMFETLKHRVEEYCHHDEDSDDGDSDHGMGSIASLANRLASYFHNMPYLVAPCS
VTAMNNSGFYYCNEDDYNAAADTSPCEDEK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34710 SPE2, ADC2, ATA... arginine decarboxylase 2 (.1.2... Potri.004G163300
[exp]
0 1 Pt-SPE1.1
AT3G12360 ITN1 INCREASED TOLERANCE TO NACL, A... Potri.010G212700
[exp]
3.00 0.8380
AT2G35390 Phosphoribosyltransferase fami... Potri.003G088400
[exp]
8.48 0.8001
AT3G55410 2-oxoglutarate dehydrogenase, ... Potri.008G051600
[exp]
9.48 0.7922
AT1G33340 ENTH/ANTH/VHS superfamily prot... Potri.019G063700
[exp]
14.96 0.7349
AT2G16600 ROC3 rotamase CYP 3 (.1.2) Potri.005G240200
[exp]
15.00 0.7442 Pt-CYP1.1
AT1G26190 Phosphoribulokinase / Uridine ... Potri.010G134400
[exp]
18.16 0.7499
AT2G34630 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE,... Potri.006G135300
[exp]
18.22 0.7736
AT5G15870 glycosyl hydrolase family 81 p... Potri.004G105300
[exp]
28.00 0.7670
AT4G16260 Glycosyl hydrolase superfamily... Potri.010G142800
[exp]
29.17 0.7289 HGN1.1
AT3G26040 HXXXD-type acyl-transferase fa... Potri.004G017600
[exp]
31.03 0.7611

Potri.004G163300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.