Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 424 / 2e-142 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 325 / 2e-104 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G06850 144 / 5e-38 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G40620 135 / 6e-35 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12940 129 / 2e-33 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 129 / 1e-32 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G13150 123 / 1e-31 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G43700 123 / 7e-31 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G06070 118 / 2e-28 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 105 / 5e-25 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125400 [exp] 818 / 0 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G156900 [exp] 147 / 8e-39 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 143 / 3e-37 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 138 / 4e-36 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G091400 [exp] 136 / 2e-35 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 136 / 2e-35 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 132 / 3e-33 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 127 / 8e-32 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 75 / 2e-14 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018061 [exp] 550 / 0 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 517 / 2e-178 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012390 [exp] 331 / 2e-107 AT4G38900 337 / 8e-111 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10024314 [exp] 320 / 2e-103 AT4G38900 337 / 1e-110 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10010616 [exp] 280 / 6e-88 AT4G38900 276 / 1e-87 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10033174 [exp] 280 / 6e-88 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10000069 [exp] 186 / 3e-55 AT4G38900 202 / 3e-62 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012391 [exp] 169 / 6e-49 AT4G38900 196 / 3e-60 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10028595 [exp] 140 / 4e-37 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10008605 [exp] 139 / 3e-36 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.004G163800.1 pacid=42795496 polypeptide=Potri.004G163800.1.p locus=Potri.004G163800 ID=Potri.004G163800.1.v4.1 annot-version=v4.1 ATGGGTGATACTGAGGAAGCAAATAGTGAAATGATACAAAGGTTGCAATCTTCTTTTGGAACAACGCAATCATCATCTACTACCATGGCTAAGCAACCCT TTTCTTTGATAAACCAAATAGATGTGTCTCAGTTGAGTTTGAACCCAACCCAAATGCGGGCGAGGCATTTTACGAATTTTTCTCAGAATTTTAGTGGGGA TAGTAACAAAAGAGTAGGGTTTCCGCCTTCCCATCCTAATCAGATCCCACCCATTTCGCCTTATTCCCAGATCCCAGTGTCCAGGCCAGTGAACCAGCAA ATGGGTCCGCAGAGTTTTAGTCTGGGGCCTACTCATTCGCGATCTTTGTCGCAGCCATCATCGTTTTTCTCCCTTGATTCCTTGCCCCCGTTGAGTCCGG CCCCTTTCCGGGATTCCTCTTCGCCTTCGGTTTCGGACCCTATTTCTACTGACGTGTTCATGGAGGAGAAGGATGGTGGTTCTCATTCGTTATTGCCTCC CTCGCCTTTTAATAGGGGCAATGCTCCACGGGTTGTTGAGAGTTTGCCTCCACGGAAAGCGCATAGAAGGTCTAACAGTGATATTCCATTTGGACTTGCT AATGTGTTGCAATGTTCACCGCCCCTTATTCCGTCGAGGGGTTCAAGTGGGTTGGAGCGGTCGATGTCTGGGAGAGAAAATTTAGGGATGGCTAAGCCAG CACAATCGGTGAAAAAGGAATGGGAGAGAGGTGGTGACAGCAATGCGGAGGGGATGGGTGAGAGGAAATCTGAAGGGGAAGTCGTGGATGATTTGTTTTC TGCTTACATGAATTTAGATAACATTGACGTGTTGAACTCCTCGGGTACTGATGATAAGAATGGTAATGAGAATCGTGAGGATTTGGATAGTAGAGCTAGT GGGACCAAGACGAATGGTGGTGATAGCAGCGATAATGAGGCAGAAAGCAGCGTGAATGAAAGTGGTGGCAACCTGCCAAGAGCAGGATTGAGTTCTTCAA CAGAGAAGAGGGAAGGGATCAAAAGGAGTGCTGGGAGTGACATTGCTCCTACCACCAGACACTACAGAAGTGTGTCAATGGATAGTTTCATGGGCAAATT GAACTTTGGTAACGAATCACCAAAGCTGCCACCCTCCCCAGGAACTCGTCCAGGACAGCTATCACCCACCGATTCAATAGATGGGAATGCCTTTAGCTTG GATTTTGGGAATGGTGAATTTAGTGGTGCTGAGCTGAAGAAAATTATGGCGAATGAGAAACTTGCTGAGATCGCTTTAGCTGACCCAAAACGTGCAAAGA GGATTTTGGCAAATCGTCAATCAGCTGCCCGTTCCAAGGAGAGGAAGATGAGATATATCTCAGAACTGGAACACAAGGTTCAGACTTTGCAGACAGAAGC TACCACATTGTCTGCCCAGCTTACTCTTTTACAGAGAGATTCTGTTGGTCTTACTAACCAGAACAATGAATTGAAATTTCGCATCCAAGCCATGGAGCAA CAAGCTCAACTCCGAGATGCTTTAAACGAGGCATTAACTGCTGAGGTCCGACGGTTGAAGATTGCGACTGCGGAGCAGGGTGGGGACTCTGATCCATCCA AGAGCATGGTTCAGCAGCAGCTTTCTATCAACCCTCAGATGTACCTGCAGCAGCCACGACCTTCACAACTTGGCATGCATCAATTGCAGCAGCAGTCATC AGCCTCCCAATTCAACATGCATCAACGGCAACGGCAACAGCAACAGCAACAGCAACAGCAGTCCTCCCAGCCACAGCCTCAACAAAATGGAAATACTACC CCAAAGCCAGATTCAAATCAATAG
AA sequence Show only first row Show all	>Potri.004G163800.1 pacid=42795496 polypeptide=Potri.004G163800.1.p locus=Potri.004G163800 ID=Potri.004G163800.1.v4.1 annot-version=v4.1 MGDTEEANSEMIQRLQSSFGTTQSSSTTMAKQPFSLINQIDVSQLSLNPTQMRARHFTNFSQNFSGDSNKRVGFPPSHPNQIPPISPYSQIPVSRPVNQQ MGPQSFSLGPTHSRSLSQPSSFFSLDSLPPLSPAPFRDSSSPSVSDPISTDVFMEEKDGGSHSLLPPSPFNRGNAPRVVESLPPRKAHRRSNSDIPFGLA NVLQCSPPLIPSRGSSGLERSMSGRENLGMAKPAQSVKKEWERGGDSNAEGMGERKSEGEVVDDLFSAYMNLDNIDVLNSSGTDDKNGNENREDLDSRAS GTKTNGGDSSDNEAESSVNESGGNLPRAGLSSSTEKREGIKRSAGSDIAPTTRHYRSVSMDSFMGKLNFGNESPKLPPSPGTRPGQLSPTDSIDGNAFSL DFGNGEFSGAELKKIMANEKLAEIALADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRIQAMEQ QAQLRDALNEALTAEVRRLKIATAEQGGDSDPSKSMVQQQLSINPQMYLQQPRPSQLGMHQLQQQSSASQFNMHQRQRQQQQQQQQQSSQPQPQQNGNTT PKPDSNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Potri.004G163800 [exp]	0	1
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.011G147400 [exp]	2.82	0.8451
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.009G032000 [exp]	4.89	0.8269
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034800 [exp]	10.19	0.8119
AT3G22380		TIC	time for coffee (.1.2)		Potri.002G052300 [exp]	11.61	0.7959
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	12.72	0.8162
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G037000 [exp]	22.44	0.7545
AT5G11550			ARM repeat superfamily protein...		Potri.006G240400 [exp]	24.97	0.7380
					Potri.001G422900 [exp]	29.29	0.7349
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	29.49	0.7652
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	32.37	0.7714

Compare expression of checked genes

Potri.004G163800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.