Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34740 893 / 0 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) AT2G16570 884 / 0 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 722 / 0 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1) AT3G24090 51 / 2e-06 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125600 [exp] 1054 / 0 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.019G054500 [exp] 58 / 1e-08 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035459 [exp] 867 / 0 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10042058 [exp] 856 / 0 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018063 [exp] 205 / 1e-63 AT4G34740 195 / 1e-60 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018062 [exp] 203 / 1e-62 AT4G34740 196 / 6e-61 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10020198 [exp] 50 / 6e-06 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0052 [poplar] [flax] NTN PF13537 [poplar] [flax] GATase_7 Glutamine amidotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.004G164000.1 pacid=42795114 polypeptide=Potri.004G164000.1.p locus=Potri.004G164000 ID=Potri.004G164000.1.v4.1 annot-version=v4.1 ATGGCAGACACCACTAGTTTCTCTGCTCTTTCAAAGCCTTCTTATTCCTTGAAACCTAACCCTCAAATACCCCAAAAGGCCCCTCTTTTTATCCTCCCCA AAACCCTTCAAAAACCTTCTCTTTTCCCTCAAAAACCTTGCCTTTCCCACAACACCCACATCACTCTTTCCTCTAAAAATCCAATCTCTGACCTTGTTTC CACAAATGAAAAGAGCCCAGATGATTTTTCTTCTTATTTTGACGATGATGACGATAAGCCTCGCGAAGAGTGTGGTGTTGTAGGTGTCTATGGTGACCCT GAAGCTTCGCGTCTTTGCTATTTAGCCCTTCATGCTTTGCAACATAGAGGTCAGGAAGGAGCTGGTATTGTTGCTGTTAATGAAAATAAGGTCTTGCAAT CTGTTACTGGTGTTGGTTTAGTCTCTGAAGTGTTTAATGAGTCAAAACTTGACCAGTTACCTGGTGATTTAGCTATAGGTCATGTTAGATATTCGACTGC CGGGTCTTCAATGCTTAAAAATGTGCAACCTTTTGTTGCTGGTTACCGGTTTGGTTCTGTTGGGGTTGCCCATAATGGGAATTTAGTGAATTATAGGAAA TTAAGGGCTACGCTAGAAGATAATGGTTCAATTTTTAACACTAGTTCTGATACTGAAGTTGTTCTGCATTTGATTGCTACATCAAAGGCTAGACCTTTCT TTATGAGGATTGTTGATGCTTGCGAGAAGCTAGAAGGGGCTTATTCTATGGTGTTTGTCACCGAGGATAAGTTGGTGGCTGTGAGGGACCCTTTTGGTTT TAGGCCTTTGGTGATGGGAAGGAGGAGTAACGGTGCTGTTGTGTTTGCTTCTGAGACTTGTGCTCTTGATTTGATTGAGGCCACATATGAGAGAGAGGTT TATCCTGGTGAGGTTTTAGTGGTGGATAAAGATGGGGTTCAATCACTTTGCTTAATGCCCCACCCTGAACCGAAACAGTGCATATTTGAGCATATTTATT TTTCTTTGCCTAATTCAGTAGTATTTGGTAGATCTGTTTATGAGTCAAGGCACGTTTTTGGGGAAATACTGGCTACCGAGGCTCCTGTTGACTGCGATGT GGTGATTGCAGTCCCAGATTCTGGGGTGGTGGCTGCACTTGGCTATGCCGCGAAAGCTGGTGTCCCTTTTCAGCAAGGGTTGATAAGGTCGCATTATGTA GGAAGGACTTTTATTGAGCCATCCCAGAAGATTAGGGACTTTGGTGTTAAGCTTAAGCTATCTCCAGTGAGGGGAGTCTTGGAGGGGAAGAGAGTTGTGG TAGTGGATGATTCAATTGTGAGAGGAACTACCTCGTCGAAAATTGTTAGGTTGCTTAAGGAGGCTGGGGCTAAGGAGGTCCATATGAGGATTGCTAGTCC ACCAATTATAGCTTCTTGCTACTATGGAGTAGATACACCAAGTTCCGAGGAGTTGATATCTAACAGAATGAGCGTGGAGGAGATTAGGGAGTTTATTGGA TGCGATTCGCTTGCATTTCTACCATTGGATAGCTTGAAGAAATTGTTAGGTGATGAGTCTCCGAGCTTTTGTTATGCTTGCTTCTCTGGGAATTACCCTG TGCAGCCAAAGGAGGTTAAGGTGAAAAGGGTCGGTGATTTTATGGATGATGGATTGAATGGAAGTCTCGAGTCCATTGATGGGAGCTGGGTGCAAGCACC CCTAAATCAGGAGGTGCATAAAGTTAGTGAAGTCGGGAAGTTGTCTTCTTTGCAGAATTGA
AA sequence Show only first row Show all	>Potri.004G164000.1 pacid=42795114 polypeptide=Potri.004G164000.1.p locus=Potri.004G164000 ID=Potri.004G164000.1.v4.1 annot-version=v4.1 MADTTSFSALSKPSYSLKPNPQIPQKAPLFILPKTLQKPSLFPQKPCLSHNTHITLSSKNPISDLVSTNEKSPDDFSSYFDDDDDKPREECGVVGVYGDP EASRLCYLALHALQHRGQEGAGIVAVNENKVLQSVTGVGLVSEVFNESKLDQLPGDLAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRK LRATLEDNGSIFNTSSDTEVVLHLIATSKARPFFMRIVDACEKLEGAYSMVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREV YPGEVLVVDKDGVQSLCLMPHPEPKQCIFEHIYFSLPNSVVFGRSVYESRHVFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYV GRTFIEPSQKIRDFGVKLKLSPVRGVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIG CDSLAFLPLDSLKKLLGDESPSFCYACFSGNYPVQPKEVKVKRVGDFMDDGLNGSLESIDGSWVQAPLNQEVHKVSEVGKLSSLQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	0	1
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	1.00	0.9570	Pt-ICK5.1,7
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Potri.005G189600 [exp]	4.24	0.9456
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.010G115300 [exp]	4.69	0.9239
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Potri.005G083100 [exp]	4.79	0.9238
AT2G20830			transferases;folic acid bindin...		Potri.013G145800 [exp]	7.61	0.9206
AT5G07900			Mitochondrial transcription te...		Potri.001G034700 [exp]	10.53	0.8982
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014100 [exp]	10.95	0.9296
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.007G130100 [exp]	12.40	0.9358
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	12.96	0.9358
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	14.00	0.9209

Compare expression of checked genes

Potri.004G164000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.