Plant FIBer expression Database

Potri.004G164200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34730 266 / 4e-91 ribosome-binding factor A family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018065
[exp]
253 / 2e-85 AT4G34730 270 / 9e-93 ribosome-binding factor A family protein (.1)
Lus10042060
[exp]
260 / 1e-82 AT4G35910 529 / 0.0 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0494 DnaA_N PF02033 RBFA Ribosome-binding factor A
Representative CDS sequence
>Potri.004G164200.2 pacid=42793879 polypeptide=Potri.004G164200.2.p locus=Potri.004G164200 ID=Potri.004G164200.2.v4.1 annot-version=v4.1
ATGATCAATGTACACCGTCACCTTCTACACCAACCTCAGCCTCTCCTAACCTACCAATCCAATTTCCTACCAATCACAACCCTCTATTCCACTTCATTCC
CAATTCGGTCACCAAAATCAACGGTCCCAATTCATCTTCAAAAGCCATTTATGTATGGGACAACTATAAAATGCATGGCAAATCCAAGGAGAGTGAAAAT
GGTAGCTAAACAAATACAAAGAGAGCTATCTGATATGCTTTTAACTGATAAAGTGTTACAGTATGCTGTTTTGCCTGAAGCTGCCTTAGGTGCTGATAAG
TACCTGTCTTCTCTCACTACCATCAGTGATGTTGAAGTTTCTGCTGATTTGCAGGTGGTTAAGGTTTACGTTTCTGTTTTTGGAGATGATAGAGGGAAGG
AGGTTGCGATTGCTGGTTTGAAGTCGAAAGCTAAGTATGTGAGGAGTCAGTTGGGTAGGCGCATGAAGTTGCGGTTGACGCCTGAGATACGGTTTATAGA
AGATGAAGGCTTGGAGAGAGGAAGCAGGGTGATTGCAATTTTAGATAGGATAAAAGCTGAGAAAGATAATGCAGAAAGTCAAGTTGACGAGCTCTCTGAC
TCTTCCAATTCAATCCAATATGATGAGGATTGGGAGGGTGATGATCCGGATGAAGACATTATATATGTCAAATAG
AA sequence
>Potri.004G164200.2 pacid=42793879 polypeptide=Potri.004G164200.2.p locus=Potri.004G164200 ID=Potri.004G164200.2.v4.1 annot-version=v4.1
MINVHRHLLHQPQPLLTYQSNFLPITTLYSTSFPIRSPKSTVPIHLQKPFMYGTTIKCMANPRRVKMVAKQIQRELSDMLLTDKVLQYAVLPEAALGADK
YLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDEGLERGSRVIAILDRIKAEKDNAESQVDELSD
SSNSIQYDEDWEGDDPDEDIIYVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
0 1
AT2G20920 Protein of unknown function (D... Potri.004G177300
[exp]
1.41 0.9733
AT3G58140 phenylalanyl-tRNA synthetase c... Potri.013G105200
[exp]
1.73 0.9783
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.002G228600
[exp]
2.44 0.9695
AT3G19220 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U ME... Potri.009G102400
[exp]
3.60 0.9643
AT1G14270 CAAX amino terminal protease f... Potri.008G147600
[exp]
5.00 0.9704
AT2G24020 Uncharacterised BCR, YbaB fami... Potri.018G105600
[exp]
5.47 0.9553
AT1G09900 Pentatricopeptide repeat (PPR-... Potri.002G109500
[exp]
6.24 0.9731
AT4G02790 EMB3129 EMBRYO DEFECTIVE 3129, GTP-bin... Potri.005G209900
[exp]
8.71 0.9611
AT2G02740 WHY3, ATWHY3, P... PLASTID TRANSCRIPTIONALLY ACTI... Potri.008G149100
[exp]
8.94 0.9593
AT5G53080 Tetratricopeptide repeat (TPR)... Potri.015G010800
[exp]
9.48 0.9675

Potri.004G164200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.