Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAS41.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45600 411 / 1e-146 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) AT2G18000 286 / 3e-97 TAF14 TBP-associated factor 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G126200 [exp] 447 / 4e-161 AT5G45600 379 / 4e-134 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) Potri.007G012700 [exp] 331 / 9e-115 AT5G45600 339 / 5e-118 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007555 [exp] 412 / 1e-146 AT5G45600 428 / 3e-153 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) Lus10012188 [exp] 392 / 3e-138 AT5G45600 408 / 1e-144 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF03366 [poplar] [flax] YEATS YEATS family
Representative CDS sequence Show only first row Show all	>Potri.004G164500.1 pacid=42796459 polypeptide=Potri.004G164500.1.p locus=Potri.004G164500 ID=Potri.004G164500.1.v4.1 annot-version=v4.1 ATGACAAACAGTTCATCGTCATCAAAAAAGAACGGTCAAGATCATCCTGTTGAAATTAGTGGACCCATACCAAAATCACAGAGAATCAAAATGAGCAAAA CTGAAGAGAACACTGAAAAGAAGATTTTGAATAAGAAGCTCAAAGATGTTGAGATTAGCGTTCCAATAGTTTACGGCAACATAGCATTCTGGCTTGGCAA AAAGGCAAACGAGTATCAATCTCATAAGTGGACTGTATATGTACGTGGGGCCACAAATGAGGATCTTGGTGTAGTAATAAAACGAGCTGTTTTTCAGCTT CATTCTAGCTTCAATAATCCTACAAGAGTCATCGAGGCACCACCTTTTGAGTTATCAGAAGCAGGCTGGGGTGAATTTGAGATTGCCATTACTCTGTATT TCCACAGTGATGTTTGTGATAAGCCTTTGAACTTATATCATCACTTGAAGTTGTACCCAGAAGATGAATCTGGCTCCTTGTCAATGAAGAAGCCAGTTGT TGTAGAATCATACGATGAGATTGTATTCCCTGAGCCTTCAGAAGGTTTCTTAGCTCGCATACAGAGTCATCCAGCCGTAAACTTGCCCAGATTACCTTCT GGTTTTACTTTGCCTCCACCTGTGCCAGTTGAAGATACAAGTAAAAGGAAGCGAGGTGACACTAAAGATCATCCTCTATCCCAGTGGTTTATGAATTTCT CTGAAGCAGACGAGCTACTACAGCTTGCCGCAGCTCGTCAGCAGGTGCAAGCTCATATAGCAAAACTCCGACGACAGATAAGCTTGATAGATGGGCAGAA TCAACAGTTGAAATCTCCCTCCGACCAGTGA
AA sequence Show only first row Show all	>Potri.004G164500.1 pacid=42796459 polypeptide=Potri.004G164500.1.p locus=Potri.004G164500 ID=Potri.004G164500.1.v4.1 annot-version=v4.1 MTNSSSSSKKNGQDHPVEISGPIPKSQRIKMSKTEENTEKKILNKKLKDVEISVPIVYGNIAFWLGKKANEYQSHKWTVYVRGATNEDLGVVIKRAVFQL HSSFNNPTRVIEAPPFELSEAGWGEFEIAITLYFHSDVCDKPLNLYHHLKLYPEDESGSLSMKKPVVVESYDEIVFPEPSEGFLARIQSHPAVNLPRLPS GFTLPPPVPVEDTSKRKRGDTKDHPLSQWFMNFSEADELLQLAAARQQVQAHIAKLRRQISLIDGQNQQLKSPSDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.004G164500 [exp]	0	1	GAS41.1
AT1G22970			unknown protein		Potri.010G117100 [exp]	8.48	0.8943
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	9.16	0.8326	Pt-PNPK2.2
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.016G078400 [exp]	11.40	0.8831
AT1G64870			unknown protein		Potri.006G252800 [exp]	12.64	0.8887
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	12.64	0.8902
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G010001 [exp]	12.80	0.8328
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023700 [exp]	14.07	0.8537
AT1G60460			unknown protein		Potri.010G041900 [exp]	15.29	0.8852
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	17.88	0.8901
AT1G56230			Protein of unknown function (D...		Potri.013G013000 [exp]	20.49	0.8648

Compare expression of checked genes

Potri.004G164500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.