Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18080 110 / 3e-33 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) AT5G18020 110 / 4e-33 SAUR-like auxin-responsive protein family (.1) AT5G18050 109 / 7e-33 SAUR-like auxin-responsive protein family (.1) AT4G34770 108 / 1e-32 SAUR-like auxin-responsive protein family (.1) AT5G18060 108 / 2e-32 SAUR-like auxin-responsive protein family (.1) AT5G18030 108 / 2e-32 SAUR-like auxin-responsive protein family (.1) AT2G21210 106 / 1e-31 SAUR-like auxin-responsive protein family (.1) AT4G38840 106 / 1e-31 SAUR-like auxin-responsive protein family (.1) AT2G21200 105 / 2e-31 SAUR-like auxin-responsive protein family (.1) AT4G38850 105 / 3e-31 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G165500 [exp] 158 / 4e-52 AT4G34770 115 / 7e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G127100 [exp] 147 / 9e-48 AT5G18080 103 / 2e-30 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G126300 [exp] 123 / 2e-38 AT5G18060 123 / 2e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126500 [exp] 122 / 8e-38 AT5G18020 124 / 1e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 121 / 2e-37 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.004G165600 [exp] 120 / 3e-37 AT4G34770 118 / 4e-36 SAUR-like auxin-responsive protein family (.1) Potri.004G164700 [exp] 119 / 8e-37 AT5G18020 122 / 8e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126700 [exp] 117 / 4e-36 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.004G164800 [exp] 116 / 1e-35 AT4G38840 120 / 3e-37 SAUR-like auxin-responsive protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039020 [exp] 114 / 2e-34 AT5G18020 118 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10009624 [exp] 110 / 3e-33 AT4G38840 119 / 9e-37 SAUR-like auxin-responsive protein family (.1) Lus10027317 [exp] 110 / 3e-33 AT5G18030 119 / 1e-36 SAUR-like auxin-responsive protein family (.1) Lus10009001 [exp] 110 / 5e-33 AT4G38840 122 / 9e-38 SAUR-like auxin-responsive protein family (.1) Lus10009627 [exp] 109 / 8e-33 AT4G38840 118 / 3e-36 SAUR-like auxin-responsive protein family (.1) Lus10009621 [exp] 109 / 1e-32 AT4G38840 115 / 3e-35 SAUR-like auxin-responsive protein family (.1) Lus10009000 [exp] 109 / 1e-32 AT4G38840 118 / 5e-36 SAUR-like auxin-responsive protein family (.1) Lus10038191 [exp] 108 / 2e-32 AT4G38840 116 / 2e-35 SAUR-like auxin-responsive protein family (.1) Lus10029198 [exp] 108 / 3e-32 AT4G38840 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10008992 [exp] 108 / 4e-32 AT2G21200 116 / 2e-35 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [poplar] [flax] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Potri.004G165400.1 pacid=42795152 polypeptide=Potri.004G165400.1.p locus=Potri.004G165400 ID=Potri.004G165400.1.v4.1 annot-version=v4.1 ATGGGTTTCCGTTTGTCTGCTATTGTACGTGCTAAGCAAATGCTCCAGCTATCACCATCAGCTTCAAGTGTGCCAAAGGGCTGCCTGGCAGTTTATGTTG GAGAAACACAAAAGAAGAGATTTGTAATTCCAGTATCATACTTGAACCAAGCTATATTTCAAGACTTGCTAAGTCAAGCTGAAGAAAAATTCGGCTATGA TCATCCAATGGGCGGTCTCACTATTCCATGCAGAGAAGAGATTTTCATGGATGTCATTTCTTGCTTAAGTTAA
AA sequence Show only first row Show all	>Potri.004G165400.1 pacid=42795152 polypeptide=Potri.004G165400.1.p locus=Potri.004G165400 ID=Potri.004G165400.1.v4.1 annot-version=v4.1 MGFRLSAIVRAKQMLQLSPSASSVPKGCLAVYVGETQKKRFVIPVSYLNQAIFQDLLSQAEEKFGYDHPMGGLTIPCREEIFMDVISCLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.004G165400 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.013G115900 [exp]	1.41	0.9913
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.010G111200 [exp]	2.00	0.9867
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	4.24	0.9883
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067800 [exp]	6.32	0.9789	ACTI.3
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	7.14	0.9879
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094000 [exp]	9.21	0.9851
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	11.22	0.9835
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Potri.006G087600 [exp]	12.96	0.9426
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082700 [exp]	13.41	0.9777
AT5G42680			Protein of unknown function, D...		Potri.014G035000 [exp]	13.67	0.8783

Compare expression of checked genes

Potri.004G165400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.