Plant FIBer expression Database

Potri.004G166400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05553 DUF761 Cotton fibre expressed protein
Representative CDS sequence
>Potri.004G166400.2 pacid=42796618 polypeptide=Potri.004G166400.2.p locus=Potri.004G166400 ID=Potri.004G166400.2.v4.1 annot-version=v4.1
ATGTCTTGCTTCAGACCTGAAAAAAAGCGTTCAGTCCCTAACAAGTTATGGAAAGGACTCGTATCTACCCTACAAAAGAAACTAAAAAGCCTTGAAACAT
CCAGGTTTCGCTCCAACAAAACCTGTCAATACCGCCTCCAACACCACCACCACCACCTTTACGACTGCCATTTTAAACACTCCTACCATGACCAAAGGGA
GGACAACTATGGTATTCATACCATAAACATGGCGGGGCCTCTTCTGATGGAATCAACCCATGCCAGGTACTTAGATATGGAGAGGAAAATCAACAGAGCG
GTGTTTGTAACAAATGATACTGTAAGGGGTTATGAAGGCTGCAACAAAGAGGAGGGGGGTGTTGCCATGGTGGAGACTGGGGATGATGAACAGGAAGCTG
GTGAGAAGAGTGACGATGGGACCTCTTTTGCCTCGTGTGAGACTACGGAACAGCATGGAGTGGATGCGTTTGCAGAGGAGTTCATAAGTAAAATGAAAGG
GATTTGGAGGCATGAAAATCAGAAATCAGAAGAGGATTGTATTGAGAGCTGGAAGGAGCATAGAGTGGATGCTATTGCAGAGGACTTCATAAATAAAACG
AGAGGGAGCTGGAAGCTTGAAAAGCAGAAATCGGTGGAGGAGTATATTCAGAGATGGGCTCGGCTCCATGAGTATTATTAA
AA sequence
>Potri.004G166400.2 pacid=42796618 polypeptide=Potri.004G166400.2.p locus=Potri.004G166400 ID=Potri.004G166400.2.v4.1 annot-version=v4.1
MSCFRPEKKRSVPNKLWKGLVSTLQKKLKSLETSRFRSNKTCQYRLQHHHHHLYDCHFKHSYHDQREDNYGIHTINMAGPLLMESTHARYLDMERKINRA
VFVTNDTVRGYEGCNKEEGGVAMVETGDDEQEAGEKSDDGTSFASCETTEQHGVDAFAEEFISKMKGIWRHENQKSEEDCIESWKEHRVDAIAEDFINKT
RGSWKLEKQKSVEEYIQRWARLHEYY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G166400
[exp]
0 1
AT3G54070 Ankyrin repeat family protein ... Potri.011G016400
[exp]
2.44 0.9872
AT3G54070 Ankyrin repeat family protein ... Potri.006G281500
[exp]
3.74 0.9868
AT3G54070 Ankyrin repeat family protein ... Potri.011G016966
[exp]
4.89 0.9805
Potri.001G021801
[exp]
11.61 0.8923
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.001G370100
[exp]
18.57 0.9502 Pt-OPT1.1
AT5G04530 KCS19 3-ketoacyl-CoA synthase 19 (.1... Potri.019G091600
[exp]
22.04 0.8670
AT1G11660 heat shock protein 70 (Hsp 70)... Potri.011G139100
[exp]
23.02 0.7847
Potri.006G196950
[exp]
23.36 0.9350
AT2G33670 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, S... Potri.005G254800
[exp]
24.00 0.9663
AT3G18670 Ankyrin repeat family protein ... Potri.011G019500
[exp]
28.14 0.9365

Potri.004G166400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.