Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34830 1044 / 0 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 139 / 6e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G16640 137 / 7e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 137 / 4e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 137 / 5e-33 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 136 / 2e-32 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62590 132 / 9e-32 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 133 / 2e-31 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 131 / 3e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 130 / 3e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131600 [exp] 145 / 3e-36 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G264800 [exp] 144 / 1e-34 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.004G147700 [exp] 139 / 8e-34 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 139 / 1e-33 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 139 / 1e-33 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 138 / 4e-33 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 138 / 8e-33 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 137 / 1e-32 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 136 / 1e-32 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012180 [exp] 964 / 0 AT4G34830 800 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007565 [exp] 923 / 0 AT4G34830 797 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 150 / 7e-37 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 139 / 3e-33 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10027916 [exp] 138 / 5e-33 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022290 [exp] 136 / 1e-32 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10042529 [exp] 136 / 3e-32 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 135 / 5e-32 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000364 [exp] 134 / 1e-31 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 133 / 1e-31 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G166600.4 pacid=42794969 polypeptide=Potri.004G166600.4.p locus=Potri.004G166600 ID=Potri.004G166600.4.v4.1 annot-version=v4.1 ATGGAGCTTGCAAAATCGCAAACCCTAACACTAACTCAAATCTCCACTCTCACTTCAATAAATCAAAGAGGTCACCGTCAATTTATTGGTTGCTTCGGCC ACAATTTGATTAGGCCTCCTTCTAGTGCCGGCCTACTACTTCGATACCGTGGAAGGAAATTACGTGTTCAAAGAAATGGAAATAAGAGGTTCGTAGTTAA GGCGTCTTTGGATGCCAATTCGGTTCTGGTCGTTGTTGCTGTCACTGCTTTCTCTGCTCTCTCTCTTGCTTACTATAATCGATATATAAATAGTAACATC AAGAACAGCAAAAAGATTACCTCTAGCTCTATTCAGGTGTTAGGTTCTCCAAGTTTTGCGTTCTCTCAATTAGGAAGAAGCATTGTGAACCAGATTACTG GAAGCCAGTTTTTGCATTTTGGAGGTCTTCATAGAGAGGCCCATGAAGTAGAAAGCCAAGGATCTGTGGAGAAGGCAAGTGAAAATAGCCATGAGTTCGA GGAAAAAGAGACCCATGTACAATTTCAGGAGACTGCGTCATTGCATGGCAGTTCTCTTTTGATAAAAGCAGTGGAGTCTTCTGGTGCTAATTTTGTTGCC GCTAATGTTTGTGATACTGTGGTTGTTGAAGAATCTGAAGTTGGTGATGCAAGGGTATCTCCTTTACCTTCCGTGCTCAGTGAATCAGGCTCTGCACTAC CTCTTATTTTTGCAACACAAATGACTGAGTTGACACAGGAAAAAAGTGGAGAAGAAATTGAGTTTGGTTCTGAGTTGTCTGGATCGGTGGAAAAGGTGAA GTCTAATGCTGTTTTGGTTCCTGTAGATAACGAGTCTATTGAAAAGGCTGAGCTTTCTAGCTATAACGGTGCCATTAGCCAATCTGTTAGAGAAGATCTT TACACCTTTTATGGGGCGAACCGATCAGTGGTAAAATCTGCATCCAATCTAGGTTTAAAAGAAACATCTTCTCATGCCTCCCTGCTTAAAAGCAAAAGAT TTTCTTCCTTGAAAATGAATACTGGACTAGAGACGGAAGATTTATCTTCTCAGCAGCCTCTTCAAGCTGCAGATCATGTTCAAAAAACAATGCCTCCTGC ACATTATGAAGGAGGGTCTTTCCATAAAAGTAAAAACCTTCCAGGAAGCAAGGAAAGAAAACATCCGATTCAAGATAGCCATTCAAAACTCCGACAGCTG CCCTCCCCAAATGGCATTCCTTCTAAAGTAAAAGACCATCCTCCAGAGGAATACAATGCTTACAATCGTTTGCTAAGAGAGGGGAGGTTAGCTGAGTGTT TAGATTTGCTTGAAGATATGGAAAGGAGGGGTTTGTTAGACATGAATAAGGTTTACCATGTGAAGTTTTTCAAACTCTGCAGAAGTCAAAAGGCTGTCAA GGAAGCTTTTCGTTTCTGCAAGCTGGTTCAAAACCCAACCTTGAGTACATTTAACATGCTAATGTCTGTGTGTGCTACTTCACAAAATTCAGCTGGGGCT TTTGAAGTTCTACAACTTGCCAAAGCTGTTGGATTGAAAGCTGACTGCAAACTTTACACAACTTTAATATCAACATGTGCTAAGAGTGGAAAAGTTGATG CAATGTTTGAAGCTGGAAAATTTGCTCTTATCGCGGTTATTTATATTAAGGTGTTTCATGAGATGGTTAATGCTGGTGTGGAACCAAATGTTCATACTTA TGGAGCACTTATTGATGGTTGTGCCAGAGCAGGACAAGTTGCCAAGGCATTTGGTGCATATGGGATAATGAGATCTAAGAATGTGAAGCCAGACCGAGTA GTCTTCAATGCACTTATCACTGCATGTGGTCAATCAGGAGCAGTGGATCGTGCCTTTGATGTATTAGCGGAAATGACAGGTGAGGCACAGCCTATTGATC CTGATCACATCACTGTTGGTGCACTGATAAAGGCTTGCACAAATGCTGGTCAGGTTGACCGGGCACAGGAAGTGTACAACATGGTCCATAAATATAACAT TAAGGGCACTCCCGAAGTTTATACAATAGCCATTAATTCTTGCAGCCAGATTGGCGATTGGGAGTTTGCATGCAAGGTGTTTGATGACATGACAAGAAAA GGCGTGGTCCCTGATGAGATGTTTCTCAGTGCATTGATAGATGTAGCAGGCCATGCTGGAAAGATGGATGCTGCATTTGAAATCATACAAGAAGCCAAGG CTAAAGGAGCACAACTTGGAATTATACCATATAGCTCATTAATGGGAGCTTGTTGCAATGCCAAAAACTGGCAGAAGGGACTGGAGCTCTATGAGGATAT AAAGTCCATGAAAATAAAGCCAACAGTCGCAACTATGAATGCTTTGATCACTGCCTTGTGTGATGGAGATCAACTTCCCAAGGCTCTTGAAGTGTTGTCA GAAATGAAGGCATGGGGCCTGCGCCCAAATACCATCACATACTCCATACTCTCAGTGGCAAGCGAGAGAAAGGATGATCTGGAGGCTGGCCTCATGCTTC TTTCTCAAGCCAAAAAAGATTGTGTAGCCCCTACCCTCATTATGAGTAAATGCATAATTAGCATGTGCTTGCGGAAATTTGAGAATGCTTGTACCCTTGG CGAGGCTGTTTTGTCTTTCAACTCAGGAAGGGCACAAATTGAAAACAAATGGACATCAGTGGCGTTAATGGTCTACCGAGGAACAATTGCAGCTGGTGAG AAGCCTACAATTGAACTTGTCTCACAGGTTTTGGGATGCCTGCAGATCCCTTGTGATGCCACACTGAAAAACAGACTTGTAGAAAATCTGGGTGTCACTG CTGTCTCGTCAAGATACTCTAACCTATGTTCATTGGTGGATGGGTTTGGAGAGTATGATCCTCGTGCTTTTTCATTACTTGAGGAAGCTGCCGCTCTTGG AATTGTGCCATGTGTATCCTTCAAAGAGAGTCCTATTACCATGGATGCTAAACAGTTGCAAATTCATATTGCTGAGGTGTACTTCTTAACAATTTTGAAA GGTCTGAAACATCGGCTTGCTGCTGGTGCAAAGTTACCGAACGTAACCATTTTACTGCCCGTAGAGAAGGCACAAGTCATAACCCTTGAAGGAGAGAAAA CAATCAATGTAGCAGGACGGATCAGCCGGGCAGTTGCATCCCTTTTGAGAAGGCTAGGACTACCTTACCAAGGGAATGAATCATACGGGAAAATTAGAAT CAATGGGATTTCCTTGAGAAGATGGCTTCAGCCAAAGCTTGATTCTCCTTTCAGTGGAAAACCAGGAGAATGGAGTACATCCCTGTCACGACTAGGAAAA GGAATAAGCTTCCAGCAACGCAATATTCGCACTGGTGATTTTTCTTTAGAATAA
AA sequence Show only first row Show all	>Potri.004G166600.4 pacid=42794969 polypeptide=Potri.004G166600.4.p locus=Potri.004G166600 ID=Potri.004G166600.4.v4.1 annot-version=v4.1 MELAKSQTLTLTQISTLTSINQRGHRQFIGCFGHNLIRPPSSAGLLLRYRGRKLRVQRNGNKRFVVKASLDANSVLVVVAVTAFSALSLAYYNRYINSNI KNSKKITSSSIQVLGSPSFAFSQLGRSIVNQITGSQFLHFGGLHREAHEVESQGSVEKASENSHEFEEKETHVQFQETASLHGSSLLIKAVESSGANFVA ANVCDTVVVEESEVGDARVSPLPSVLSESGSALPLIFATQMTELTQEKSGEEIEFGSELSGSVEKVKSNAVLVPVDNESIEKAELSSYNGAISQSVREDL YTFYGANRSVVKSASNLGLKETSSHASLLKSKRFSSLKMNTGLETEDLSSQQPLQAADHVQKTMPPAHYEGGSFHKSKNLPGSKERKHPIQDSHSKLRQL PSPNGIPSKVKDHPPEEYNAYNRLLREGRLAECLDLLEDMERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAGA FEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEAGKFALIAVIYIKVFHEMVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV VFNALITACGQSGAVDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACKVFDDMTRK GVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACCNAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLS EMKAWGLRPNTITYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFENACTLGEAVLSFNSGRAQIENKWTSVALMVYRGTIAAGE KPTIELVSQVLGCLQIPCDATLKNRLVENLGVTAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAEVYFLTILK GLKHRLAAGAKLPNVTILLPVEKAQVITLEGEKTINVAGRISRAVASLLRRLGLPYQGNESYGKIRINGISLRRWLQPKLDSPFSGKPGEWSTSLSRLGK GISFQQRNIRTGDFSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	0	1
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	1.41	0.9511
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	2.82	0.9517
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	3.74	0.9356
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	4.00	0.9295
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Potri.010G135100 [exp]	4.24	0.9431
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Potri.001G017300 [exp]	4.89	0.9079
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	5.29	0.9398
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	6.78	0.8941
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	7.93	0.9284
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	7.93	0.9118	Pt-COL11.2

Compare expression of checked genes

Potri.004G166600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.