Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38810 520 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28830 74 / 2e-14 calcium-binding EF hand family protein (.1) AT2G44310 46 / 6e-06 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G127800 [exp] 644 / 0 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) Potri.013G040500 [exp] 72 / 8e-14 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.005G052900 [exp] 71 / 2e-13 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.002G218300 [exp] 48 / 1e-06 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 47 / 3e-06 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 47 / 3e-06 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218201 [exp] 47 / 3e-06 AT2G44310 136 / 4e-42 Calcium-binding EF-hand family protein (.1) Potri.014G161200 [exp] 47 / 3e-06 AT2G44310 143 / 1e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 47 / 3e-06 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007567 [exp] 566 / 0 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2) Lus10012178 [exp] 533 / 0 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2) Lus10026291 [exp] 521 / 0 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10042380 [exp] 497 / 2e-177 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2) Lus10009175 [exp] 66 / 6e-12 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1) Lus10015916 [exp] 66 / 7e-12 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand
Representative CDS sequence Show only first row Show all	>Potri.004G166900.1 pacid=42794360 polypeptide=Potri.004G166900.1.p locus=Potri.004G166900 ID=Potri.004G166900.1.v4.1 annot-version=v4.1 ATGGAGAAGGGTAGCACAAGCAAGGAAGAGATAAGAACAAGTGGAGGAAATGGACAGGTTCTAGACGGTTCAGATATAATGGAGTTGGTTGGGAATGAAG AGGTGTTTAGCAGTTTTGTGGATCATAAGTTCCAAGAGCTGGATAGGGATAGAGATGGTAAGCTCTCTGTGAAAGAACTTGAACCCGCTGTTGCTGATAT TGGTGCTGCCCTTGGCTTGCCTGCGCAGGGTTCTTCTCCCGATTCTGATCACATCTACTCTGAGGTTCTAAATGAATTCACACATGGCAAGCAAGAGAAA GTGAGCAAGACTGAATTTAAAGGAGTTATATCAGATTTTCTTCAAGGCATGGCTGCTGGTTTGAAGCGAGACCCTATAGTCATCCTCCGTATGGATGGGG AGGACCTCTTAGAGTTCATTAAAGGACCTGGTTATGAAGCAGAAATGGTGTCCTTATTTTCCCAGTTGGAATCACCTGGTGGATCACTCCATCATCACAT TGTCAAAGCTTTGGAACAGCTTACTGTTGATCAAGGAATGCCTCCATCTTCAGATTCCTGGGTAATGAGTAACATTGTGGAACCAGCTTTACAATCTTGT GCTGGTCAAGATCAGGACAAGCCCCCTTCTCAAGAGACATTCTTGGTGGAGTTCAAGAAAGTGGCACAGTGTGTAGCACAACGTCTGAAAGAGCAGCCTG TGATCGTTGCACACAGTGAAAACACCTTTGATGGAAGTGGAATTAAGAGACTTTTATCCAACAAATTTGAATTAGACAAGAATCTAAACACGGCAATAGA AAATGTGCCAAAAGATCGCAATGGGAAAATATCCAAGGAGTATTTGCGTGTGGCGCTAGATACGGTCGCTCCATCAGCTGACCTGCCTCCAGTTGGTGCA ATTCATGAGATGGACAACGTAATAAGCGAGATGCTTAAGATGATGAACGCAGATGATGGGAAACTGGTTAAAGAAGATGAGTTTAAGAAGGTGTTGACAG AAATCTTGGGAAGTATAATGTTGCAGTTAGAGGGCAGCCCCATCTCAATCTCTTCAAATTCTGTTGTCCACGAGCCCCTCGCTAATTCCTCCTCTACATT TTTGCAGCCACCTTCCTAG
AA sequence Show only first row Show all	>Potri.004G166900.1 pacid=42794360 polypeptide=Potri.004G166900.1.p locus=Potri.004G166900 ID=Potri.004G166900.1.v4.1 annot-version=v4.1 MEKGSTSKEEIRTSGGNGQVLDGSDIMELVGNEEVFSSFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPAQGSSPDSDHIYSEVLNEFTHGKQEK VSKTEFKGVISDFLQGMAAGLKRDPIVILRMDGEDLLEFIKGPGYEAEMVSLFSQLESPGGSLHHHIVKALEQLTVDQGMPPSSDSWVMSNIVEPALQSC AGQDQDKPPSQETFLVEFKKVAQCVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKNLNTAIENVPKDRNGKISKEYLRVALDTVAPSADLPPVGA IHEMDNVISEMLKMMNADDGKLVKEDEFKKVLTEILGSIMLQLEGSPISISSNSVVHEPLANSSSTFLQPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38810			Calcium-binding EF-hand family...		Potri.004G166900 [exp]	0	1
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.001G105200 [exp]	2.44	0.9154	PtrcGpx3_1
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.016G066100 [exp]	4.24	0.9124	Pt-SPP1.2
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	10.90	0.9030
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048900 [exp]	13.03	0.8888
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	13.71	0.9055
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Potri.002G054400 [exp]	15.16	0.9048
AT5G62680			Major facilitator superfamily ...		Potri.012G071500 [exp]	15.87	0.9033
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	16.00	0.9009
					Potri.013G031800 [exp]	17.60	0.8964
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Potri.008G057300 [exp]	18.65	0.8826

Compare expression of checked genes

Potri.004G166900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.