Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61430 96 / 7e-23 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT2G45960 96 / 1e-22 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT4G00430 93 / 7e-22 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT1G01620 91 / 4e-21 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 91 / 6e-21 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT2G16850 90 / 8e-21 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37170 87 / 8e-20 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT4G35100 87 / 1e-19 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT1G17810 86 / 4e-19 BETA-TIP beta-tonoplast intrinsic protein (.1) AT2G37180 85 / 1e-18 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128000 [exp] 452 / 1e-161 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.009G127900 [exp] 433 / 5e-154 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128300 [exp] 416 / 2e-147 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128500 [exp] 365 / 3e-127 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128100 [exp] 189 / 1e-58 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.016G113300 [exp] 96 / 9e-23 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.010G191900 [exp] 93 / 7e-22 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.004G176300 [exp] 92 / 3e-21 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.008G065600 [exp] 90 / 1e-20 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007568 [exp] 342 / 5e-118 AT2G45960 108 / 3e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10042385 [exp] 317 / 8e-109 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10042375 [exp] 154 / 1e-44 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10014978 [exp] 89 / 2e-20 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 89 / 5e-20 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 88 / 5e-20 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10028273 [exp] 88 / 7e-20 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10026295 [exp] 84 / 3e-19 AT3G61430 66 / 2e-13 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10023184 [exp] 85 / 9e-19 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10014840 [exp] 84 / 4e-18 AT2G45960 461 / 1e-165 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.004G167000.1 pacid=42794615 polypeptide=Potri.004G167000.1.p locus=Potri.004G167000 ID=Potri.004G167000.1.v4.1 annot-version=v4.1 ATGGCTGGATATCCAGGGAGTACTGTTGAGGATGAAGAGAGCCTGTATAGTGGGAAAAAACCCCAGCCTTCTGCAACAACTCCAATGGCAGAGGTAGTTC AAAACGAAGGAGGGATCCAGAAGAAGAAATCCCCGACATTAAGAGAGATATTGGGTTTGGAAGACCTCTTTTCCTTGACGACATGGAGAGCATCAGTGGC TGAGCTCCTGGGCACAGCTGTTCTTGTTTTTGCACTGGACACCATAGTCATTTCAACAATTCAGACTCAGACAAAGACACCCAACCTTATATTGTCAACC CTTGTTGCCATCATTGTCACAATTCTCCTACTTGCTACCTATCCCATTTCTGGTGGCCACATTAATCCTATTGTCACTTTCGCCGCCTTACTAACTGGCC TTATTTCCATCTCAAAAGCTTTTATCTATATCTTGGCTCAATGCGTTGGTGGCATTGTAGGTGCACTGGCACTAAAAGCGGTGGTCAACAGCGAAATTGA ACGAACTTTCTCTCTCGGAGGCTGTACCCTCACCGTTGTCGCACCGGGACCAGAGGGGCCGACTGTGGTAGGTCTGGAGACAGGACAGGCTCTTTGGCTA GAGATAATTTGTGGGTTTGTTTTTCTTTTCGCTTCAGTGTGGATGGCCTTCGATCATCGCCAAGCCAAGGGTTTGGGCAGAGTTAATGTTTTGATCATCG TCGGAATAGTACTGGGCCTTCTCGTGTACGTTTCTACCACAGTCACGGCTACGAAAGGCTACGCCGGGGCAGGGCTGAATCCAGCAAGGTGTTTGGGACC AGCCATTGTTAGAGGGGGCCATCTTTGGAATGGGCATTGGGTGTTTTGGGTAGGGCCAGCTATTGCTTGTGTGGCATTCGCCATATACACAAAGGTCATT CCAAGCCAACTTTCCCACACCATAGAGTAA
AA sequence Show only first row Show all	>Potri.004G167000.1 pacid=42794615 polypeptide=Potri.004G167000.1.p locus=Potri.004G167000 ID=Potri.004G167000.1.v4.1 annot-version=v4.1 MAGYPGSTVEDEESLYSGKKPQPSATTPMAEVVQNEGGIQKKKSPTLREILGLEDLFSLTTWRASVAELLGTAVLVFALDTIVISTIQTQTKTPNLILST LVAIIVTILLLATYPISGGHINPIVTFAALLTGLISISKAFIYILAQCVGGIVGALALKAVVNSEIERTFSLGGCTLTVVAPGPEGPTVVGLETGQALWL EIICGFVFLFASVWMAFDHRQAKGLGRVNVLIIVGIVLGLLVYVSTTVTATKGYAGAGLNPARCLGPAIVRGGHLWNGHWVFWVGPAIACVAFAIYTKVI PSQLSHTIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.004G167000 [exp]	0	1
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.017G145800 [exp]	1.00	0.9535
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025966 [exp]	4.00	0.9508
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170100 [exp]	4.89	0.9387
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G063750 [exp]	6.00	0.9219
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	6.32	0.9447
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025900 [exp]	7.07	0.9407
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128900 [exp]	7.48	0.9316
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.014G030900 [exp]	7.48	0.8480
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Potri.007G066100 [exp]	8.36	0.9340
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170001 [exp]	10.53	0.8754

Compare expression of checked genes

Potri.004G167000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.