Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29810 406 / 3e-139 COBL2 COBRA-like protein 2 precursor (.1) AT3G02210 406 / 5e-139 COBL1 COBRA-like protein 1 precursor (.1) AT5G60920 399 / 4e-136 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 386 / 1e-131 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 332 / 4e-110 COBL6 COBRA-like protein 6 precursor (.1) AT5G49270 141 / 4e-36 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 134 / 1e-33 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 130 / 2e-32 COBL11 COBRA-like protein 11 precursor (.1) AT4G16120 129 / 4e-32 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G60950 118 / 8e-31 COBL5 COBRA-like protein 5 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117100 [exp] 412 / 3e-141 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 406 / 4e-139 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 395 / 3e-135 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 390 / 7e-133 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 380 / 5e-129 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 378 / 1e-128 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 375 / 7e-127 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 370 / 1e-125 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 357 / 4e-120 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026288 [exp] 462 / 2e-161 AT3G29810 374 / 9e-127 COBRA-like protein 2 precursor (.1) Lus10042386 [exp] 457 / 5e-160 AT3G29810 367 / 2e-124 COBRA-like protein 2 precursor (.1) Lus10021144 [exp] 410 / 2e-140 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 409 / 4e-140 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 400 / 1e-136 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034671 [exp] 405 / 4e-136 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 397 / 2e-135 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 396 / 3e-135 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 396 / 3e-135 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017866 [exp] 380 / 8e-129 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.004G167100.2 pacid=42794377 polypeptide=Potri.004G167100.2.p locus=Potri.004G167100 ID=Potri.004G167100.2.v4.1 annot-version=v4.1 ATGAAAATAATTATCTTTTATGTACGGCCATCTGTGTTGATGTTATTGTTGTTACTTTCTATCTGCACTTTTTCAGATTGTTATGACCCTTTGGATCCCA ATGGAAACATTACAGTTACTTTCGATATCCATGATTGGAGAAGTGATGGATATGCGGCAAGGGTAACTATACAAAATTTCTATCAGTATCGCCATGTTGA TAAACCAGGTTGGAATATAGGGTGGTCATGGACCAACGAGGAGATCATCTGGTCAATGTTTAGTGCATGTGCCACTAAGCAAGGGGAATGCTCACCAGTG AAGTACGGAGGCGCTCACTCTTGCATGCCAAACCCTGTCATTGTTGATCTCATGCCAGACGCTCCACCAGTGAACATGTCCGAGAATTGCTGCCGTGGTG GCCTTATTTCTGCCCGGGCCATTGATCCTCTGAGGTCACTCTCCTCCTTTGAAATGACAGTTGTCAACTTGGATGGGAATTCTACTGTCTATCCACCTGC AAATCTTACATTATTGGCACCAGGTCCTGGCTACACTTGTGGTCCGGTTGTGGAGACGACACCAACAGTCTCTTCAGATTTTGGGGGTAGAAGGCAAGTT CAGGTTTACAAAACATGGAAATCAACATGCACTTACTCAACTTTTTTGGCTAACAAAACACCTGGTTGTTGTGTCTCGCTTTCGACATTCTATAACCCTC GAGTCACAGCATGCCCTGACTGCAGCTGTGGATGCAGAGATGCAGACCAAAGTACTGTTTCATGCGTAAGCAGTGAAGTTGATTCCTTGCCATTATCAGA TGTGGAAAAGGCAGACATAGTGCAATGCACTGCTCATATGTGCCCAGTCAGAGTTCATTGGCATGTGAAGAACAATTATATGGACCACTGGAGAGTGAAA ATGACAATCTCTAACTACAACTACAAGAAAAATTACTCAGACTGGAATGTGTTGGTACAGCATCCTGGTTTCAAGCAGAATTCAACTACATTTAGCTTCA ACAGTACGCTGCTCCCCACTGCTGGGTTTGCAGATGAGGTTGCCCTCTTCTGGGGTTTGCAGGCTTACAATAATGAACTTTTGCAAGCTGATCAGCGGCA ACTGGGCTCGGTATCGACAGAGATACTCTTCGAAAAGGACTCAGGCATGTTCACGTTAAGAAATGGATGGGCCTTACCTCGAAGAATATATTTCGGCGGC GAGGAGTGCGCAATGCCACTTCCAGACACTTTCCCAGTGCTACCAAACGGTAGCTCCTGCACAAAGCCCCCTCGTTATCTTTTCCTCCTACTCCTAACCT ATATGACTTTCAAATCACTAGCTAGTTGGCTTTGA
AA sequence Show only first row Show all	>Potri.004G167100.2 pacid=42794377 polypeptide=Potri.004G167100.2.p locus=Potri.004G167100 ID=Potri.004G167100.2.v4.1 annot-version=v4.1 MKIIIFYVRPSVLMLLLLLSICTFSDCYDPLDPNGNITVTFDIHDWRSDGYAARVTIQNFYQYRHVDKPGWNIGWSWTNEEIIWSMFSACATKQGECSPV KYGGAHSCMPNPVIVDLMPDAPPVNMSENCCRGGLISARAIDPLRSLSSFEMTVVNLDGNSTVYPPANLTLLAPGPGYTCGPVVETTPTVSSDFGGRRQV QVYKTWKSTCTYSTFLANKTPGCCVSLSTFYNPRVTACPDCSCGCRDADQSTVSCVSSEVDSLPLSDVEKADIVQCTAHMCPVRVHWHVKNNYMDHWRVK MTISNYNYKKNYSDWNVLVQHPGFKQNSTTFSFNSTLLPTAGFADEVALFWGLQAYNNELLQADQRQLGSVSTEILFEKDSGMFTLRNGWALPRRIYFGG EECAMPLPDTFPVLPNGSSCTKPPRYLFLLLLTYMTFKSLASWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Potri.004G167100 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091600 [exp]	2.00	0.9977	Pt-CHI3.6
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	2.44	0.9970
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	3.46	0.9967
AT3G48660			Protein of unknown function (D...		Potri.017G065444 [exp]	4.89	0.9933
					Potri.005G130750 [exp]	5.19	0.9968
AT5G49350			Glycine-rich protein family (....		Potri.013G158300 [exp]	7.93	0.9941
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.016G057900 [exp]	8.36	0.9809
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	13.74	0.9937	CHI3.4
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	13.85	0.9942
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074101 [exp]	15.90	0.9935

Compare expression of checked genes

Potri.004G167100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.