Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38800 368 / 9e-130 ATMTN1, ATMTAN1 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1) AT4G34840 349 / 2e-122 ATMTN2, ATMTAN2 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128700 [exp] 469 / 6e-170 AT4G38800 387 / 4e-137 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 1, methylthioadenosine nucleosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026287 [exp] 382 / 4e-135 AT4G34840 356 / 3e-125 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1) Lus10042387 [exp] 380 / 1e-133 AT4G34840 341 / 1e-118 ARABIDOPSIS METHYLTHIOADENOSINE NUCLEOSIDASE 2, Phosphorylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [poplar] [flax] PUP PF01048 [poplar] [flax] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G167200.2 pacid=42795256 polypeptide=Potri.004G167200.2.p locus=Potri.004G167200 ID=Potri.004G167200.2.v4.1 annot-version=v4.1 ATGGCTCCTCACGGTGAGGGATCAGAGGAAGCCATGGTTGTTCAAGATGAGAATCGCAAACCCATTTCCTCCATCCTCATCGTTATCGCAATGCAAACAG AAGCCATGCCTGTTGTTAACAAATTCCAGCTCAAAGAAGACCTTGATCCTGTGTTTCCAAAAGGGGTGCCTTGGGTCAGATATCATGGCATCTACAAGGA CCTCCATATCAACTTAGTATGGCCTGGAAAGGATTTGACTCTGGGGGTTGATAGTGTAGGCACAATTTCTGCATCTCTTGTGACCTATGCTGCTATCCAA GCATTACAACCAGACTTAATTATCAATGCAGGCACTGCTGGTGGCTTTAAGGTCAAAGGAGCATGCATTAGTGATGTGTTTCTTGTATCTGATGTTGCTT TCCATGACAGAAGAATCCCTATTCCTGTTTTTGATCTCTATGGAGTTGGTTTGAGGCAGTGTTTCTCGACACCTAATCTCTTGAAGGAACTTAACCTAAA GGCTGGGAAATTATCTACTGGAGACTCTCTTGATATGTCCCCACAAGATGAAGCGTCGATTGTTGCAAATGATGCTACGGTTAAAGACATGGAGGGAGCT GCTGTTGCTTATGTGGCTGATCTTTTGAAAGTCCCTGCAATATTCATAAAAGCTGTGACTGACATAGTGGATGGTGACAAGCCAACTGCAGAGGAGTTCT TGCAGAATCTGGCTGCAGTGACTGCTGCTCTTGACCAGGCAGTCGCCCAAGTTGTTGATTTCATCAGTGGAAAGTGTCTTTCTGAGCTTTGA
AA sequence Show only first row Show all	>Potri.004G167200.2 pacid=42795256 polypeptide=Potri.004G167200.2.p locus=Potri.004G167200 ID=Potri.004G167200.2.v4.1 annot-version=v4.1 MAPHGEGSEEAMVVQDENRKPISSILIVIAMQTEAMPVVNKFQLKEDLDPVFPKGVPWVRYHGIYKDLHINLVWPGKDLTLGVDSVGTISASLVTYAAIQ ALQPDLIINAGTAGGFKVKGACISDVFLVSDVAFHDRRIPIPVFDLYGVGLRQCFSTPNLLKELNLKAGKLSTGDSLDMSPQDEASIVANDATVKDMEGA AVAYVADLLKVPAIFIKAVTDIVDGDKPTAEEFLQNLAAVTAALDQAVAQVVDFISGKCLSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	0	1
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.007G018000 [exp]	2.82	0.7987	Pt-TRXH.1,PtrTrxh4
AT4G29735			unknown protein		Potri.006G146800 [exp]	3.74	0.8026
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.009G115000 [exp]	4.00	0.7686	Pt-ACT2.1
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	6.92	0.7583
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.012G137800 [exp]	7.93	0.7552	MP2.4
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	10.19	0.7379
AT3G54790			ARM repeat superfamily protein...		Potri.005G225400 [exp]	10.24	0.7330
AT1G13380			Protein of unknown function (D...		Potri.010G124800 [exp]	10.72	0.7672
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	11.22	0.6761
AT4G14320			Zinc-binding ribosomal protein...		Potri.010G251500 [exp]	11.53	0.7604

Compare expression of checked genes

Potri.004G167200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.