Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHSL6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34850 637 / 0 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 480 / 8e-170 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 478 / 2e-169 Chalcone and stilbene synthase family protein (.1) AT5G13930 263 / 1e-84 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT3G52160 56 / 2e-08 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT4G34520 56 / 2e-08 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT4G34510 54 / 1e-07 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G01120 53 / 2e-07 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G19440 53 / 3e-07 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 52 / 4e-07 KCS9 3-ketoacyl-CoA synthase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128800 [exp] 721 / 0 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 501 / 2e-177 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.014G056300 [exp] 500 / 2e-177 AT1G02050 595 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 285 / 2e-93 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 282 / 5e-92 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 282 / 5e-92 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 278 / 2e-90 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 277 / 3e-90 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 269 / 4e-87 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026286 [exp] 652 / 0 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 645 / 0 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 486 / 7e-172 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 475 / 1e-167 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 277 / 4e-90 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 275 / 2e-89 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 271 / 6e-88 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 272 / 4e-87 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 201 / 3e-61 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 131 / 4e-36 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00195 [poplar] [flax] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G167300.1 pacid=42795266 polypeptide=Potri.004G167300.1.p locus=Potri.004G167300 ID=Potri.004G167300.1.v4.1 annot-version=v4.1 ATGGGGAGCGAACAGATCGGACAAGGAGGCTTGACATCGAAGGCCAGTCCTGGCAAAGCTACAATTCTGGCTCTCGGCAAGGCATTTCCTCACCAGCTAG TCATGCAAGAATTTCTGGTTGATGGGTATTTCAAAAACACCAATTGCGATGATCCAGAGCTCAAGCAGAAGCTAACTCGACTCTGCAAAACAACCACCGT GAAAACTAGGTATGTGGTCATGTCAGATGAGATCCTGAACAAATACCCTGAACTTGCCATTGAAGGCATCCCTACCATCAAACAGCGATTAGATATCTGT AACGATGCTGTAACACAAATGGCCATTGGAGCTTCACGGGCTTGCATCAAGAAATGGGGCAGGTCTGTATCAGATATAACTCACATGGTCTACGTCTCCT CGAGTGAAGCTAGGCTACCAGGTGGCGACCTTTACTTAGCAGGAGGCCTTGGACTCAGCCCTGAAACGCAGCGTGTTATGCTATACTTTTCAGGGTGCTC TGGAGGTGTGGCTGGCCTTCGTGTTGCCAAGGATATCGCTGAGAACAATCCGGGAAGTCGAGTTTTGCTGGCTACTTCTGAAACTACCATTATCGGGTTC AAACCACCAAGTGTAGATAGACCATATGATCTAGTTGGGGTTGCCCTCTTTGGGGATGGTGCCGGAGCAATGGTAATAGGCACAGATCCAGTTCCGGTTA CTGAAAGTCCTCTCTTTGAGCTTCACACAGCAATCCAGAATTTCTTGCCAAACACTGAAAAGACTATTGATGGCAGGCTAACTGAAGAGGGTATCAGCTT CAAGCTAGCAAGGGAGCTTCCGCAAATAATTGAAGATAACATTGAAGGATTCTGCCACAAGTTGATAGGAGTTGCTGGACTAACTGACAAGGATTACAAC AAGATGTTTTGGGCAGTCCATCCAGGCGGGCCCGCAATCTTGAATCGAATGGAAAAGAGACTTGATTTGCTTCCTGACAAACTGAATGCTAGTAGAAGAG CTCTAATGGATTATGGCAATGCTAGCAGCAACACCATTGTGTACGTGCTGGAGTACATGATAGAAGAAAGCAGGAAGATGAAGGCAGGCGCTGCAAATTG TGATTGGGGCTTGATACTGGCTTTTGGACCTGGAATAACCTTTGAGGGAATTCTTGCAAGAAACCTAACTATCTAA
AA sequence Show only first row Show all	>Potri.004G167300.1 pacid=42795266 polypeptide=Potri.004G167300.1.p locus=Potri.004G167300 ID=Potri.004G167300.1.v4.1 annot-version=v4.1 MGSEQIGQGGLTSKASPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPELKQKLTRLCKTTTVKTRYVVMSDEILNKYPELAIEGIPTIKQRLDIC NDAVTQMAIGASRACIKKWGRSVSDITHMVYVSSSEARLPGGDLYLAGGLGLSPETQRVMLYFSGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGF KPPSVDRPYDLVGVALFGDGAGAMVIGTDPVPVTESPLFELHTAIQNFLPNTEKTIDGRLTEEGISFKLARELPQIIEDNIEGFCHKLIGVAGLTDKDYN KMFWAVHPGGPAILNRMEKRLDLLPDKLNASRRALMDYGNASSNTIVYVLEYMIEESRKMKAGAANCDWGLILAFGPGITFEGILARNLTI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Potri.004G167300 [exp]	0	1	CHSL6
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G026600 [exp]	1.00	0.6900
AT1G12200		FMO	flavin monooxygenase, Flavin-b...		Potri.001G121000 [exp]	12.80	0.6491
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	21.63	0.5930
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	24.53	0.6053
AT1G50140			P-loop containing nucleoside t...		Potri.007G069800 [exp]	29.49	0.6138
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	43.74	0.5712
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.005G226900 [exp]	46.72	0.5377
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	53.66	0.6011
AT1G50870			F-box and associated interacti...		Potri.019G062900 [exp]	64.26	0.5926
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	68.24	0.5572

Compare expression of checked genes

Potri.004G167300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.