Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30150 1491 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007572 [exp] 1826 / 0 AT4G30150 1258 / 0.0 unknown protein Lus10012174 [exp] 1809 / 0 AT4G30150 1257 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10441 [poplar] [flax] Urb2 Urb2/Npa2 family
Representative CDS sequence Show only first row Show all	>Potri.004G167600.1 pacid=42794468 polypeptide=Potri.004G167600.1.p locus=Potri.004G167600 ID=Potri.004G167600.1.v4.1 annot-version=v4.1 ATGGTTGATTCTTCTGAGTTATCAGCAAAAAAGGTTAAGAAGAAGCGAACGCTTAGTAGCCATGAAGAGAAACGACAAAAACCTTCCAAAATAAACCGGA TTGATCATGATTCAGCGAAAGAGAAGGACTCGAAGCAAGAAACTGAAGAAGTTGCGAGTCCATGGAGGAATTTGCAGCTGATTTTATCGATTCAAAACAG AGAAATTCATCTTCAAAAGAAGGTTGAACTAGCTTATGATTTTGTGAACTCGAGAGAGAAAGGAGGAGGAAAAGACGCCGATGTAGATCGTGAAACGGTG AAAGTATCACGAGTTGTAGCTTTTCTTAATGATTGGGTACAGTCACTTTTGATTTCTACAGATAAGAAAATCGAAGTTGATGGAGAGGGAGTTATTGAGG CGTGTTTGGATTATAGGTGCTGGGTGATTTTCAAGTTTTGCTTGGAGGAGTCTTTGAGATTGCAGGTTTCTTTGAGCTTTTCAAGGAACCTTTTGAGGGC TATAGGGTGTGTTGCGAGAAATGTGCTTTCTGTACTGACAGTCCCATCAGTTCGTTTGAAAGAATCATTTTTTACTGGTTCCGGGTTTGAATTGTACAGT GTTGTGCTTGATTGTGTTTCTCTGGTGTTCTTATCTCATGGTGGCTTGTCGAACGAGAATTTGGACTTGTGGATTTTGTCAATTCTTCCGGTTCTTGAAT TTGTTCGCAAAGTGTATGGTGAGAAGCTCGAGGGTGGCAATGTGGGTGTTTTTGCTTTGCGGTTCTCTTGCTTGGTGCTTGAGCCATTTGCCAAGTTCTT GAGGGTTCATCCAACAAGGAAAAATGGATTTCGTGATTTTGTGGATAAACTCCTTGAGCCATTGTTGCATTTGTTGGGTGTCTTGCATCTTCAGAGTGAT GAAAGCAATCCTGGCTGGACAAGAAACTTGCTAGTTGCTGTTGAAGAGGTTTTATCACAAGGGTTATTTCATCCAACCCACATTGATGGATTTCTGAGCC TACGTGTTGCAGAGAAGTATTCTGCATCCAATGATGGAGAAACGAAGGAGTCAAAAACTGTCATTCAAAGTTACCACAGACATTTCTTTGATAAACTTGA AAGAATTATTCTTGCAAAGAAGGAATCTGCTATGAGTGGCTTAGGAGAACTGTTCTATTTGCTTGTTGATCGTGTGAAAAAGCAAAAAGAAACTTTAGTT CTGTCCGATGGTATGAAGATAGTGGAGAGAACTGAAGGTTCACGGCACTTGTCTGGTCAACTATCTAAAACGTTATATGGTAGCAGTACTCCTCTAGACA CTAGTTATGGACCCAGTATTTTGAGTGCAGAAAAAAGAAAATCACTTTTCAATTTCTTTGTACAGATTACAGACCCTCTTTTGCTTGAGATAAATGGCTA CCTTCAATCTAAATTGGAAGTACGGCCTCTATTATTGGATGTTCACTACACAATCAAATCTATTAATAATTTACTAGCCTGCTTTTTGCGTGAAAAACTG TATATAAAAACAGAGGATATATCTGAAGGGGCTTGCCTTAATTTCTTGAAGAAGGTTTACAATGCTATATTGCCATTCATGGCCAATTTACTTTGTTTGC CAACATATAATGTAGATTCACGAACACAAGAGACCTTTACTTTATTAGCAAGGGAGCTACTTGCTGCTGTTGGGCACCTATTGGATATCGAGTATGAGGT TATCGAGAATGATTTAACCAGGTTATGGTTTATCATGCTTTCCTGCTTGGCCTTTGGCTATTCATTTAAGGATGCACCAAATGAATGCTCGATGACATCT CAGATACTAGGACTTGGATGTCAGCTGGTCAAGCTTTACAGTGAACTTCGACAGGTGAAAAGTACTATCTTTGCAATCTGCAAAGCGACAAGGCTTATAA TAGTATATGACAAAGGTGGTGATGCTGGGCTGAATTATGATAGTTTGGGATTCTGCAAAATTTCTTTACCACATGCATCATATGCAAAAGCAGTGGAAAT GTTGTTTTGCTCGCATGAATTTAAACTAGCCATTCGTAATGATATATACTCCATACCAGAAGGGCAGGCAAGTGAGTGCATTCAGCACTTAACTGCAGAT CTATCAGAATCCATGGAATGGATGAAGACTACTTGCTCATTGGCAGACGAGGAGGTGTTTGGTGAATCAAATGCAAATTCCAGCATGCATGGTTTTGATC TGCAAGTGGAACTTTTCGGAAGAGGATTGTCTGAAGTATATGCTCTGGTGCTAGATTCATTGAATGTCACAGCTGGGAACAGCAGCATTGTTGGACGAAC TATGAAGGACTTGATGGCTGTAATTCGTCCATACATGAGTATTCTGGTAGGACCAGAGTCAGAAAGTGTCAATGAGTTCATCTCTTCCGTGACAGGAAGA ACTTCTGATGTCAGGCTTGCTGGAAACACGCATGATATGCTGAAATTTGGAGTGTCCACCCACTGGGTCCTTGTGTTCTTTTCTCGCATGTACATGTCAT GCCGAAGTTTATACAGGCAAGCAGTCAGCCTTATGCCTCCAGATGTATCAAGAAAGATGTCAGCAGTAATGGGGGATCCATTTACAGCATATTCTGCAAG GGATTGGATGAATAAAACTGACTGGACAGATGGGGGTTATTTTTCTTGGATTCTCCAACCATCAGCCTCTCTGCCTGTCATTATACAATCTGTTTCTGAC ATTTATCTTCAGGGATATGTTGCAGATTGTTGTCCTCTGATTTACGTATTGCTTACTATGGCTCTTCAGAGGCTTGTTGATTTGAACAGGCAGATAAAAT CTTTTGAGTATCTGCAGCAAAGCAATGATAATATCATTCAATTTAAGCTGCTTGATGATGCTGGCTCATCACTGTACTCCAAAAGGAGCAGAAAGTGTGG CAAACGCATTGCTGTTTTTAAGCAGGAGGCAACTGATCTTACTGAGTTCCTGATGAGTTACCTCTCCTTTTTGGATAATGAACGACTTCCAGTCAACTCT TCTAATGCTGCAACTTTTGTAGATACCTGCAACCAAGCTCTACATGGAAGTGATAAATGGGTTTTTGGTGTCAGTTCTGTGAATGAGAAGTCATTGCCTG CTGCAATTTGGTGGATTATTTGCCAAAATATCGATATATGGTCCCCTCATGCTAGTAAGAAGAAGTTGAAGATGTTCATCAAGCATGTGATCCTTACTTC TCTTCCATATATAACAAAAGGCTGTACACAGGTGGAAAGGCATCACACAAATGAAGCCCATTTCCTTGATAAAATTTCTGTGCATCAAATCTCAGCAGAA CTTCTGGCTGATTCTGTTCTGTATGAACATAAATTTGTTCGCAGGCATTTGGCATCCAGGTTTTGCAATTTATTGGAGAAGTCAATCCTACCACTATTTG GAGACGTCAAACTGAACATGTCACCTAAATGGAAAGAGGGTTTAAGTGCACTTGAGAACTCATATGTTGTTTTAAGCAGAAAATCCTCTACATGTGATGA GTTGACAGGGGGTAAACCAGCCTCCCATTTATTGTCTGAGATGGCTGCAGATATTTCCAGAGAATCAACTGCTGTGAAATTTACAGCTTGTCAAAGTTTG CTTAGGCTTTTGTGCTGGATGCCAAAAGGATATATCAATTCAAAATCATTCTCACTTTATGTTACTAGCACACTCAACCTTGAAAGGCTTGTGATTGGCC ACCTGTTAGAATGTGGGGACTCATTCTTCTCACATAAGCAGTATGAGCTTTTAAGGTTGCTGGTGGCCTGCCGGAGGGCTCTGAAATGTCTAATTATGGC ATATTGTGAGGAGAAAGTTAGAACTACTCATTCTGCACTCATTCCTGTTCTGTTTGAGGATGTACATTCTGTATTATGGCTTTCCAGATCAGTGTCTGTG GTGTTTAGGCTTCAAGAGACACTGTCAGAAGATAAAGCTTGTGAAGTTGCAGATATGATCTTTTCATTGATGGATCACACATCATATGTGTTCCTGACAC TAAGCAAATATCAATGTCCTTCTGCTGTCTCCATAATTGCTGAAAAACCTTATACAGAGCAACTCAATTCTGATGTTACCCAGGAACAGAGCAGTGTAAA CGAGTCTCTGCCATGTTTGGATACCTCAAACGACGTTGAAAGCTGTAAAAGTGTTATCCTCATTGCTGAAAGTTTGAAGGAACAGGCACAGGACTTAATT ATTTCTTTGAAAGATGCTCATTGCAATGAGAAATCAAGTGATGAAATCGATGTTGACTGGAACAAATTATCTTCAATGGTCTCTTGCTTCAGTGGGTTCA TGTGGGGCCTAGCATCTGCATTGGACCACTCCAATGCAACAGATAGTGATTATAAGGCGAAGCTGTTGAGATGGAAATGTGAAGTCATCTCAAAAATTAG TCATTGTATAAATGCATTTGCTGATTTTATTTGTTTTTCTTTCCACATGCTGTTTGTCAAGGATGATCTCCAACCTAATCATTTATCTGCTACTGGAAAT TTTGTAAAGTCTGATGATAGAGACAGTTCACTGGTTTCAGGTGACTCTTGGAAAGTCACCGTGAATAAACATGGTTCACAGTCAGAAAACGTTACCTCTA TTGCTGGTATTCTAAGTAAGCTTGACTCATATGAATGCCTACCATTAAATAAGGAGTGGTTGCAAAGTTTTCTTGAAGGTGATCATCCTAAAGCAGCGGT ATTAATCAGGCAGCTATTAATTGCGGCGTCAGCTATTGTGAAGCTCAATTTGGAGACTAAATGCACTCCTTTGTTGTCTAGTTTGGTGCCAAGTTTTACT GGCATATCTCAAGTCTTGCTCTTGAAGTTAGCAGATGGTACCGAGGTACCAAAACCATTCTCTTTTGTTTGGTTAGATGGTGTTCTGAAGTATCTGCAAG AGCTAGGGAGTCATTTTCCCATAACTAATCCTACCTCGACTAGAAACGTGTTTTCAAAGCTATTAGAGTTACACTTGAAGGCTTTGGGAAAATGCATATC TTTACAGGGGAAAGAAGCTACTCTGACTTCTCATGATAAAGAATTGAGCACTAATACACTCCACAGTCATATAGGATCAGCTTCTCTTTCTCATCCATAC TATTTAGATGAATTTAAAGCAAGGTTGAGGATGTCATTCAAAAGTTTGATAAGAAAACCATCAGAGTTGCATCTTTTGTCTGCAATACAGGCTATAGAGA GAGCACTGGTAGGAGTGTACGAAGGCTGCCCAATAATTTATGAGATTACTACTGGGAATGTGGATGGTGGAAAGGTTTCTTCAACTGTTGCAGCTGGCAT TGACTGCTTGGATCTGGTTCTGGAATATGTTTCAGGTCGTAAACGTTTAAATGTTGTTAAAAGGAACATTCAGAGTTTAGTTGCTGCCTTGTTCAACATA ATTCTGCACGTGCAAAGTCCATTAATTTTCTATCGGATAGCAATGGATAGTGAAAGGTATAATGGACCAGATCCAGGAGCAGTCATTCTTATGTGTGTTG AGGTGCTAACAAGAGTTTCTGGAAAACATGCTTTATTTCAAATGGATTCCTGGCATGTAGCACAGTCTTTACATATACCAGCGGCACTTTTTCAAGATTT TGATCAACTGAGAATTTCTCAAGGTCCAGCTTTATCTAATTCTTTGTTGAACTCGGGCAGCCAAGATTGTAATACTGTGGGAGGCAGGGATACCTGTGTT GTAGATCTACAATTCTCCGTGGAGTTATATACTGCATGCTGCCGGTTACTGTACACGGTTCTGAAGCATCACAAAAGTGAGTCAGAAAGGTGCATTTCTT TACTTCAAGAATCTGAGCGTGTTCTTCTTCATTGTTTGGAGATGGTGGATGTTGATTTATCAGTCAGAAAAGGTTATTTTTCGTTGGGAGTTCATGAGGG GGTAAAATGTGCTAGTTCTTTCCGGAGGATTTATGAGGAGTTAAGGCAGCAAAAAGATGTCTTTGGCCAGCATTGTTTCAAGTTTTTATCCAATTACATT TGGGTCTATTCAGGATATGGCCCGCTTAAAACTGGCATCAGAAGGGAGATAGATGAAGCTCTGAGACCTGGTGTGTATGCTTTAATAGATTCCTGCTCAG CAGATGATCTTCAATATCTGCATTCTGTATTTGGGGAGGGTCCTTGCAGAAACACATTGGCTACTTTGCAGCATGATTACAAACTGAATTTCCAATATGA AGGAAAAGTTTGA
AA sequence Show only first row Show all	>Potri.004G167600.1 pacid=42794468 polypeptide=Potri.004G167600.1.p locus=Potri.004G167600 ID=Potri.004G167600.1.v4.1 annot-version=v4.1 MVDSSELSAKKVKKKRTLSSHEEKRQKPSKINRIDHDSAKEKDSKQETEEVASPWRNLQLILSIQNREIHLQKKVELAYDFVNSREKGGGKDADVDRETV KVSRVVAFLNDWVQSLLISTDKKIEVDGEGVIEACLDYRCWVIFKFCLEESLRLQVSLSFSRNLLRAIGCVARNVLSVLTVPSVRLKESFFTGSGFELYS VVLDCVSLVFLSHGGLSNENLDLWILSILPVLEFVRKVYGEKLEGGNVGVFALRFSCLVLEPFAKFLRVHPTRKNGFRDFVDKLLEPLLHLLGVLHLQSD ESNPGWTRNLLVAVEEVLSQGLFHPTHIDGFLSLRVAEKYSASNDGETKESKTVIQSYHRHFFDKLERIILAKKESAMSGLGELFYLLVDRVKKQKETLV LSDGMKIVERTEGSRHLSGQLSKTLYGSSTPLDTSYGPSILSAEKRKSLFNFFVQITDPLLLEINGYLQSKLEVRPLLLDVHYTIKSINNLLACFLREKL YIKTEDISEGACLNFLKKVYNAILPFMANLLCLPTYNVDSRTQETFTLLARELLAAVGHLLDIEYEVIENDLTRLWFIMLSCLAFGYSFKDAPNECSMTS QILGLGCQLVKLYSELRQVKSTIFAICKATRLIIVYDKGGDAGLNYDSLGFCKISLPHASYAKAVEMLFCSHEFKLAIRNDIYSIPEGQASECIQHLTAD LSESMEWMKTTCSLADEEVFGESNANSSMHGFDLQVELFGRGLSEVYALVLDSLNVTAGNSSIVGRTMKDLMAVIRPYMSILVGPESESVNEFISSVTGR TSDVRLAGNTHDMLKFGVSTHWVLVFFSRMYMSCRSLYRQAVSLMPPDVSRKMSAVMGDPFTAYSARDWMNKTDWTDGGYFSWILQPSASLPVIIQSVSD IYLQGYVADCCPLIYVLLTMALQRLVDLNRQIKSFEYLQQSNDNIIQFKLLDDAGSSLYSKRSRKCGKRIAVFKQEATDLTEFLMSYLSFLDNERLPVNS SNAATFVDTCNQALHGSDKWVFGVSSVNEKSLPAAIWWIICQNIDIWSPHASKKKLKMFIKHVILTSLPYITKGCTQVERHHTNEAHFLDKISVHQISAE LLADSVLYEHKFVRRHLASRFCNLLEKSILPLFGDVKLNMSPKWKEGLSALENSYVVLSRKSSTCDELTGGKPASHLLSEMAADISRESTAVKFTACQSL LRLLCWMPKGYINSKSFSLYVTSTLNLERLVIGHLLECGDSFFSHKQYELLRLLVACRRALKCLIMAYCEEKVRTTHSALIPVLFEDVHSVLWLSRSVSV VFRLQETLSEDKACEVADMIFSLMDHTSYVFLTLSKYQCPSAVSIIAEKPYTEQLNSDVTQEQSSVNESLPCLDTSNDVESCKSVILIAESLKEQAQDLI ISLKDAHCNEKSSDEIDVDWNKLSSMVSCFSGFMWGLASALDHSNATDSDYKAKLLRWKCEVISKISHCINAFADFICFSFHMLFVKDDLQPNHLSATGN FVKSDDRDSSLVSGDSWKVTVNKHGSQSENVTSIAGILSKLDSYECLPLNKEWLQSFLEGDHPKAAVLIRQLLIAASAIVKLNLETKCTPLLSSLVPSFT GISQVLLLKLADGTEVPKPFSFVWLDGVLKYLQELGSHFPITNPTSTRNVFSKLLELHLKALGKCISLQGKEATLTSHDKELSTNTLHSHIGSASLSHPY YLDEFKARLRMSFKSLIRKPSELHLLSAIQAIERALVGVYEGCPIIYEITTGNVDGGKVSSTVAAGIDCLDLVLEYVSGRKRLNVVKRNIQSLVAALFNI ILHVQSPLIFYRIAMDSERYNGPDPGAVILMCVEVLTRVSGKHALFQMDSWHVAQSLHIPAALFQDFDQLRISQGPALSNSLLNSGSQDCNTVGGRDTCV VDLQFSVELYTACCRLLYTVLKHHKSESERCISLLQESERVLLHCLEMVDVDLSVRKGYFSLGVHEGVKCASSFRRIYEELRQQKDVFGQHCFKFLSNYI WVYSGYGPLKTGIRREIDEALRPGVYALIDSCSADDLQYLHSVFGEGPCRNTLATLQHDYKLNFQYEGKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30150			unknown protein		Potri.004G167600 [exp]	0	1
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Potri.007G059100 [exp]	1.00	0.9019
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	4.47	0.8910
AT5G07900			Mitochondrial transcription te...		Potri.001G029400 [exp]	4.89	0.8743
AT5G40520			unknown protein		Potri.017G018300 [exp]	7.61	0.8340
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	10.90	0.8702
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.015G073100 [exp]	12.16	0.7852
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	15.29	0.8656
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	15.74	0.8664
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	17.74	0.8398
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Potri.004G043200 [exp]	19.05	0.8546

Compare expression of checked genes

Potri.004G167600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.