Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21170 489 / 5e-176 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) AT3G55440 318 / 2e-109 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129500 [exp] 583 / 0 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G031200 [exp] 314 / 8e-108 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 308 / 1e-105 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 290 / 3e-98 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 287 / 2e-97 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012171 [exp] 511 / 0 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10007575 [exp] 485 / 1e-174 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10005461 [exp] 297 / 6e-101 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10040807 [exp] 296 / 6e-101 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 296 / 6e-101 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 274 / 6e-89 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00121 [poplar] [flax] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Potri.004G168000.3 pacid=42796287 polypeptide=Potri.004G168000.3.p locus=Potri.004G168000 ID=Potri.004G168000.3.v4.1 annot-version=v4.1 ATGGCTATGCTCTCAACTTCACTCTCCGGTCCAAAATCTGCAACTTCGTATTGCGCGCCTGAGTTCTCCGGTCTTCGCCGTTTATGTCCAAACAACAATA CCAACAACTCTCATTCCCAGTCTTTTCTTCGCTTCTCTTCTCCCCGGAAACCTCTTAGAGGAGTCTTTGCCATGGCTGGCACTGGACAGTTCTTTGTTGG AGGAAATTGGAAATGTAATGGAACAAAAGAATCCATTACCACGCTCATTTCAGACCTGAACAGCGCAAAGTTGGAGTCTGATGTCGACGTTGTTGTAGCA CCTCCCTTTATTTACATCGATCAGGTCAAGTCTTCCTTAACAGACAGGATTGAGATATCAGCTCAGAACTCTTGGGTCAGTAAGGGTGGGGCTTTCACAG GAGAAATCAGTGTGGAACAACTGAAAGACATTGGCTGCAAGTGGGTTATCCTTGGGCATTCTGAGCGTAGACATGTAATTGGCGAAGACGATCAGTTTAT AGGAAAGAAGGCAGCTTATGCCTTGAGCCAGGGTGTTGGAGTAATTGCTTGTATTGGTGAACTGTTAGAAGAAAGAGAAGCAGGGAAAACTTTTGATGTT TGTTATCAGCAACTGAAGGCGTATGCAGATGCTGTGCCCAGCTGGGATAATATAGTCATTGCATATGAGCCTGTTTGGGCTATTGGTACTGGTGTAGTGG CCACACCTGCGCAGGCTCAGGAAGTACATGTAGCTGTTCGTGATTGGCTTAAAAACAATGTCTCGGCAGAAGTCGCATCAAAAACACGCATTATATATGG AGGATCCGTGAATGGAGGAAACTGTGCTGAACTTGCAAAGCAAGAAGATATTGACGGTTTCCTTGTTGGTGGTGCATCCTTGAAGGGCCCTGAGTTTGCT ACCATTGTCAATTCTGTAACATCCAAGAAAGTTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.004G168000.3 pacid=42796287 polypeptide=Potri.004G168000.3.p locus=Potri.004G168000 ID=Potri.004G168000.3.v4.1 annot-version=v4.1 MAMLSTSLSGPKSATSYCAPEFSGLRRLCPNNNTNNSHSQSFLRFSSPRKPLRGVFAMAGTGQFFVGGNWKCNGTKESITTLISDLNSAKLESDVDVVVA PPFIYIDQVKSSLTDRIEISAQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSQGVGVIACIGELLEEREAGKTFDV CYQQLKAYADAVPSWDNIVIAYEPVWAIGTGVVATPAQAQEVHVAVRDWLKNNVSAEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFA TIVNSVTSKKVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.004G168000 [exp]	0	1
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	3.46	0.7692	TIM.2
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	3.46	0.7629
AT5G19760			Mitochondrial substrate carrie...		Potri.003G220400 [exp]	4.47	0.7645
AT2G44060			Late embryogenesis abundant pr...		Potri.007G146300 [exp]	4.89	0.6949
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	5.65	0.6931
AT2G45290			Transketolase (.1)		Potri.014G068200 [exp]	8.24	0.7208
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	11.61	0.6631
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	13.07	0.6923
AT5G40810			Cytochrome C1 family (.1.2)		Potri.004G203800 [exp]	13.41	0.7058
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	20.00	0.6568	HSP70.4

Compare expression of checked genes

Potri.004G168000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.