Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21150 525 / 0 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129700 [exp] 557 / 0 AT2G21150 507 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Potri.015G102501 [exp] 43 / 2e-05 AT3G48770 63 / 7e-13 DNA binding;ATP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012170 [exp] 497 / 2e-178 AT2G21150 520 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Lus10007576 [exp] 493 / 9e-177 AT2G21150 522 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Lus10007574 [exp] 82 / 6e-17 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012172 [exp] 61 / 7e-10 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04921 [poplar] [flax] XAP5 XAP5, circadian clock regulator
Representative CDS sequence Show only first row Show all	>Potri.004G168400.1 pacid=42795938 polypeptide=Potri.004G168400.1.p locus=Potri.004G168400 ID=Potri.004G168400.1.v4.1 annot-version=v4.1 ATGTCGGGCATGGGAGACGGGTACGTGGGCACTGCCCAAGACGCCGTGAGGATCCGGCGGCTACAGAAGCAAAGAGAAGCTGAACGCCTTAAAATCCAAG AGCTCAAATCTAAGTCAGCCTCCGCTAAGGACCAGCCCGGTCTCCTCCAATTCGGGTCAAGTACATCCGAGATTCTCGAGACTGCATTTAAGAAGGAAAC TGTAGGTCTGGTTACAAGAGAACAGTATGTAGAGAAGAGGGTTAATATTCAGACCAAATTTGAAGAAGAAGAGAAGGAGAAGTTAGAAAAGCTACGGAAA GAGGAGGAGGAGCTTCAGTTGCAGAAGCGGAAAAAGAGGAAGATTAAGGGGAATTCTAAGTTATCGTTTGCTGATGATTTTGAGAATGGAAGTGATGAAG AGGATGGCGAAAATAAAAGCTTAGAGCCAAAGAGATTAGTGAACGGTAAATTTGGAAAAGATCCCACAGTGGAAACAAGCTTTTTGCCTGACAGTGAGCG AGAGGCAGAGGAGCAAGCTGAGCGTGAAAGGCTGCGGAAACAGTGGCTTCGTGAACAGGAACAGATTCGAAATGAGCCCCTTGAAATCACTTACAGCTAC TGGGATGGAGCAGGCCATAGAAGAGTCATCCAGGTTCGTAAAGGTGATACCATAGGAGAGTTTCTTCGGGCAGTTCAGCAACAACTTGCGCCAGAGTTCA GAGAAATTAGAACAACTTCTGTGGAGAATTTGCTTTATGTGAAAGAGGATCTTATCATTCCCCATCAACACAGTTTCTATGACCTGATCATTAACAAGGC TAGGGGAAAAAGTGGTCCGCTTTTCCACTTTGATGTGCACGAGGATGTGCGAACAATTGCTGATGCAACTATAGAGAAGGATGAGTCCCATGCCGGTAAA GTTGTTGAGAGGCACTGGTATGAAAAGAATAAACACATCTTTCCTGCTTCAAGATGGGAGATATATGACCCGACACAGAAGTGGGAGCGTTACACCATCC ATGGGGATTGA
AA sequence Show only first row Show all	>Potri.004G168400.1 pacid=42795938 polypeptide=Potri.004G168400.1.p locus=Potri.004G168400 ID=Potri.004G168400.1.v4.1 annot-version=v4.1 MSGMGDGYVGTAQDAVRIRRLQKQREAERLKIQELKSKSASAKDQPGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVNIQTKFEEEEKEKLEKLRK EEEELQLQKRKKRKIKGNSKLSFADDFENGSDEEDGENKSLEPKRLVNGKFGKDPTVETSFLPDSEREAEEQAERERLRKQWLREQEQIRNEPLEITYSY WDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYDLIINKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGK VVERHWYEKNKHIFPASRWEIYDPTQKWERYTIHGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.004G168400 [exp]	0	1
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Potri.001G209100 [exp]	1.73	0.8218
AT2G45950		ASK20	SKP1-like 20 (.1.2)		Potri.015G146500 [exp]	4.89	0.7330
AT4G38495			unknown protein		Potri.016G127200 [exp]	8.00	0.8076
					Potri.001G306100 [exp]	8.83	0.8144
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.010G204900 [exp]	9.79	0.7764
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	14.17	0.8111
					Potri.001G123250 [exp]	21.65	0.7747
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Potri.009G012300 [exp]	27.49	0.7621
AT5G53800			unknown protein		Potri.011G121000 [exp]	28.46	0.7575
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	34.64	0.7344

Compare expression of checked genes

Potri.004G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.