Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16595 259 / 4e-87 Translocon-associated protein (TRAP), alpha subunit (.1) AT2G21160 239 / 2e-79 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129800 [exp] 384 / 2e-136 AT2G21160 245 / 2e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012169 [exp] 347 / 1e-121 AT2G16595 277 / 3e-94 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10007577 [exp] 345 / 1e-120 AT2G16595 276 / 1e-93 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10026282 [exp] 332 / 2e-115 AT2G16595 254 / 5e-85 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10042391 [exp] 236 / 2e-77 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03896 [poplar] [flax] TRAP_alpha Translocon-associated protein (TRAP), alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.004G168500.1 pacid=42794978 polypeptide=Potri.004G168500.1.p locus=Potri.004G168500 ID=Potri.004G168500.1.v4.1 annot-version=v4.1 ATGAAGCATCTTAGGGTTTTCTTCTTCGCTCTCCTCCTCCTCGCTTCTCCTCTCCTTCAAGTTGCTACGTGTCAGTCAGATTCAGATGCTGAAGTCGCAG AGACTGCGGAAGAAGTCAGTGATCTTGGGATTGTTGGTGAGGATGCACAGGATTTTGGTGATGCGAATTTTAGCCCAGCTCCAGGAGTCGAGACAGTCTG TGTTTTCCCCAAAAACAGTGCACGTTTGGTGACGGCTGGAGAAGAGACTGAACTATTAGTTGGAATGAAAAATGATGGGGAGCTGCCCATAACTATCATT GCAATTAGGGCCAGTGTTCATCTTCCTTTTGATCATAAGCTACTGGTTCAGAATCTCTCTGCTCAGGGCTTCAACAATGCAACTGTTCCAGCCTCTGCTC AGGCTACCTTCCCATATATCTTTGGTGTCAGCAAGTACTTGCAGCCCGGAAGCTTCGATCTTGTAGGCACCATTGTTTACGAGATAGACCAGCATCCATA CCAAAGTACCTTCCACAATGGTACCATTGAAGTTGTTGACTCTGGTGTTTTCCTAAGCATGGAGTCGGTTTTTCTTATTACCCTTGGAATTGCCCTTCTT GTCCTCTTTGGTCTATGGGTTAATGGTCAAATACAGAATCTTTCTAAGAAAACTAAGAGGGCTCCGAAAGTGGAGGTTGGAACTGGGACTAGAGATGCCT CCATGGATGAATGGCTTGAGGGAACAGCATTGGCCAAGTCACAATCCCAGAAGTTAAAGAAGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.004G168500.1 pacid=42794978 polypeptide=Potri.004G168500.1.p locus=Potri.004G168500 ID=Potri.004G168500.1.v4.1 annot-version=v4.1 MKHLRVFFFALLLLASPLLQVATCQSDSDAEVAETAEEVSDLGIVGEDAQDFGDANFSPAPGVETVCVFPKNSARLVTAGEETELLVGMKNDGELPITII AIRASVHLPFDHKLLVQNLSAQGFNNATVPASAQATFPYIFGVSKYLQPGSFDLVGTIVYEIDQHPYQSTFHNGTIEVVDSGVFLSMESVFLITLGIALL VLFGLWVNGQIQNLSKKTKRAPKVEVGTGTRDASMDEWLEGTALAKSQSQKLKKKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	0	1
AT5G14030			translocon-associated protein ...		Potri.001G323400 [exp]	1.00	0.9636
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.001G210900 [exp]	1.73	0.9577
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.001G263700 [exp]	3.16	0.9483
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Potri.002G198300 [exp]	3.46	0.9467
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.015G141900 [exp]	3.46	0.9612
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	3.87	0.9562
AT3G07480			2Fe-2S ferredoxin-like superfa...		Potri.014G177100 [exp]	4.12	0.9440
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	4.24	0.9422
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	4.89	0.9509	APFI.1
AT3G12390			Nascent polypeptide-associated...		Potri.003G190800 [exp]	5.65	0.9566

Compare expression of checked genes

Potri.004G168500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.