Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38770 163 / 1e-44 ATPRP4, PRP4 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) AT2G21140 142 / 5e-38 ATPRP2 proline-rich protein 2 (.1) AT5G15780 42 / 0.001 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129900 [exp] 293 / 2e-95 AT4G38770 153 / 1e-42 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) Potri.004G114300 [exp] 57 / 2e-08 AT5G15780 178 / 5e-52 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G100600 [exp] 51 / 1e-06 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026281 [exp] 145 / 8e-38 AT2G21140 120 / 2e-30 proline-rich protein 2 (.1) Lus10042392 [exp] 137 / 2e-35 AT2G21140 115 / 5e-29 proline-rich protein 2 (.1) Lus10034365 [exp] 44 / 0.0003 AT5G15780 129 / 7e-34 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF01190 [poplar] [flax] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Potri.004G168600.10 pacid=42795721 polypeptide=Potri.004G168600.10.p locus=Potri.004G168600 ID=Potri.004G168600.10.v4.1 annot-version=v4.1 ATGCGGATTCTCCCCGTTTTTCGAGGAGCAGTTCTGTGCTTCTACGTGTCCTTACTCTTTGCTGCAACTTTCTGCTATGCCGGTGACAAGACAGTTGAGG TAGTTGGGACAGGAGAATGTGCAGATTGTGCAGAGAGTAACATTAAGACTGTTCATGCCTTTTCAGGGCTTCGAGTGACAATTGATTGCAAGCCTGAAAA TGGAGAGTTCAAAACAAGAGGGTTTGGTGAGCTTGACGAAGAAGGGAAGTTCAAAGTGTCTCTTCCAAGTGAGGTTGTGAAGGATGGGAAATTGAAGGAG GAATGCTATGCACAGCTTCACAGTGCATCAGCTGCACCATGCCCATCCCATGATGGCCTAGAGTCCTCCAAGATCGTCTTGAAGTCGAAAACTGATGAGA AACACACATTTGGGCTTGCAGGGAAACTGAAGTTTTCACCTGTGACTTGCACTTCAGCATTCTTGTGGCCTCACTTCAAGTATCCACCACTACCTAAATT GCCTCCATTGCCAAAATGGAAACTTCCACCATTGAAAGATTTTCACCATCCTTACCTATTCCCACCTAAAGTCTTTCCTCCATTCCCCCCGAAGGTGTTC CCACCTCTCCCACCAAAGCTCTTCCCTCCAAAGCCTTTTCCTCCACCACTTCCAGTCTACAAGAAGCCACTCCCACCTCCAGTTCCAATCTACAAGCCAG AGCCAAAACCACCAGTTTTCAAGCCTCCTCCGGTCCCAATCTACAAGAAGCCACTCCCACCTCCAGCTCCAATTCCAATCTACAAGCCAGAGCCAAAACC ACCAGTCTTCAAGCCTCCTCCGGTCCCAATCTACAAGAAGCCACTCCCACCTCCAGTTCCAATCTACAAGAAGCCACTCCCACCTCCAGTTCCAATCTAC AAGCCAAAGCCCAAACCACCAGTTTTCAAGCCTCCTCCGGTCCCAATCTACAAGCCAAAACCACCAGTCTTCAAGCTTCCTCCGGTCCCAATCTATAAGA AGCCACTCCCACCTCCAGTTCCAATCTACAAGCCAAAGCCAAAACCACCAGTTTTCAAGCCTCCTCCGGTCCCAATCTACAAGCCAAAACCACCAGTCTT CAAACCCCCTCCTGTTCCAGTCTACAAACCAAAGCCAAAACCACCAATCTACAAGCCTCTCCCACCTCCTGTTCCCATCTCCAAGCCTCTCCCTCCAATC CCAAAGATCCCTCCATTTTATAAGAAGCCATTGCCCCCTCTTCCTAAGCTTCCCCCTCACCCCAAGATTCCCCCAATCTACAAGCCTAAACCACCAGTCT TCAAGCCCCCTCCCGTTCCAATCTACAAACCAGAGCCAAAACCACCAATCTACAAGCCTCTACCACCTCCCGTTCCCATCTATAAGCCTCTCCCTCCAAT CCCAAAGATCCCTCCATTTTACAAGAAGCCATGCCCCCCTCTTCCTAAGCTTCCTCCTCACCCCAAGATTCCTCCAAAGTACCTCAACCACCCCAAGTTT GGAAAATGGCCTCCCTTGCCACCATATTCTCCCATTCATTAG
AA sequence Show only first row Show all	>Potri.004G168600.10 pacid=42795721 polypeptide=Potri.004G168600.10.p locus=Potri.004G168600 ID=Potri.004G168600.10.v4.1 annot-version=v4.1 MRILPVFRGAVLCFYVSLLFAATFCYAGDKTVEVVGTGECADCAESNIKTVHAFSGLRVTIDCKPENGEFKTRGFGELDEEGKFKVSLPSEVVKDGKLKE ECYAQLHSASAAPCPSHDGLESSKIVLKSKTDEKHTFGLAGKLKFSPVTCTSAFLWPHFKYPPLPKLPPLPKWKLPPLKDFHHPYLFPPKVFPPFPPKVF PPLPPKLFPPKPFPPPLPVYKKPLPPPVPIYKPEPKPPVFKPPPVPIYKKPLPPPAPIPIYKPEPKPPVFKPPPVPIYKKPLPPPVPIYKKPLPPPVPIY KPKPKPPVFKPPPVPIYKPKPPVFKLPPVPIYKKPLPPPVPIYKPKPKPPVFKPPPVPIYKPKPPVFKPPPVPVYKPKPKPPIYKPLPPPVPISKPLPPI PKIPPFYKKPLPPLPKLPPHPKIPPIYKPKPPVFKPPPVPIYKPEPKPPIYKPLPPPVPIYKPLPPIPKIPPFYKKPCPPLPKLPPHPKIPPKYLNHPKF GKWPPLPPYSPIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.004G168600 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041700 [exp]	2.23	0.9970	Pt-PRP4.3
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G144900 [exp]	4.24	0.9977
AT1G02260			Divalent ion symporter (.1)		Potri.012G144000 [exp]	6.32	0.9972
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G113100 [exp]	8.36	0.9953
AT4G24275			unknown protein		Potri.004G224600 [exp]	9.64	0.9913
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Potri.019G075201 [exp]	9.79	0.9969
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126700 [exp]	10.58	0.9925
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079300 [exp]	10.77	0.9917
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Potri.005G109300 [exp]	11.00	0.9952	MDPIP1.1
AT2G45180			Bifunctional inhibitor/lipid-t...		Potri.018G025900 [exp]	11.22	0.9965

Compare expression of checked genes

Potri.004G168600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.