Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38760 498 / 5e-155 Protein of unknown function (DUF3414) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130000 [exp] 881 / 0 AT4G38760 1972 / 0.0 Protein of unknown function (DUF3414) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012168 [exp] 530 / 3e-166 AT4G38760 1804 / 0.0 Protein of unknown function (DUF3414) (.1) Lus10007578 [exp] 520 / 1e-162 AT4G38760 1812 / 0.0 Protein of unknown function (DUF3414) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G168700.2 pacid=42794495 polypeptide=Potri.004G168702.1.p locus=Potri.004G168700 ID=Potri.004G168700.2.v4.1 annot-version=v4.1 ATGTCAATCCCTAAAACCGTCGATTCCTCGCTCCGGTCTGATTCTTTCACTGCCATCCTCACTGACCTCGAAAACGCCTCCCTCTCTCTCTCTCTATTTC TCTTTGCGAAAAAGCTGAAGGAGAATCACGCATGGTTGGTGGAAACTCTTTCTCTATTTAAGAAACTGAACGCGGCATCACGATTGCCTGATACCTTCTG GCTTTGTGTCAGTTCATTATCAGACACATTTACATATAGGGGAATACAGGTTGCTGCTGCCAGGGTGCTATCTATGTTGTTTATCACAGCATATTATATT GAACCAAATTCGTCTGGCAATGTGTGCCTTGGTCTGGATGATAAGCAGATCGCAGATATAAGGCACTCTGTAAAAAGTACATTAGTTAAGCAGTTGGACC AGAATGGAGATTTATTTGTTGCCAAAGTCAATCTGCTTACTGCTGCAACACATTATCAGGTTGCCACCAGTTTGTTCATTGTACATGTGATGGGGAAATT AGTAATCGGTAATGCAGGAAGTTTATCTGTATCATTGGTTGAGAAGATCCGCATCGCTTTTAACACGTGTGATACTGTCTTTAATTGGGCAAGCAATTCT CTCTATTTAGTCAATTGTTTGATGAGTTTTGTCCACTTTAAAGTTGATAGTTCGTTGGCAATCCCTTCAAGAGTGACATTGCATCTTTTTAGTTTGGGTG CAACAGTTGAGCTTGAAGTAAAGGAACTAAAAGGTCTGATGCTCACTGATCTCTACTATCACCTTCAAGGAAAGCTAGAGGGTTGTAAAATTGGTCCTGG ACCATTTAAAGAACTCTCTTGGTATCTGGTGGAATCAAACTGTTTGCTGAGCTATCAACACAAGTATGGTGACGAACATTATGGAAAGATTTTCACTTAT TGGAAAGCTTCTAAAGCAATCACACAAACAATGTTGGAGTGCTTGAAGGATGCAAATTTGAAGGTTTTAATAGCTAGTTCAAAGCTTTCTGCTCTGAAAG CAGTTCTAACTGCTCTTAGTATGTGTGAAGATAATAATAAGGCTACTACTGAGGTGAAGATTCCTGACCGACTCTGCTTTTCATGCATTGACAACATGTG TAAATCTTTTCTCACCACAGTAGAATCGCTAGCTCCAGTTCTGGATATTATTAATTTCCTTGCTGCAAAAGCAGAATTAATTCTAAATCTCATGAGATCT GCGCAAAGCAACTTATCTTTATCCATTTGTACACTTTTCTTGAAAATGTCAGGTTCTGGCCTCAAATTGCTGAATGGGTTCAGGTCATCTGTGACTGGGG TTAAAACTATAAAGCTTTTGCTCATGCTACTGCTTCTTGCTTTGGAGATTAGGCTTTTGCCTATTCTGTGCAATTGCATTACAGCTACTGAGTGTAGTTC CCTCTCCTTGGCTACCATTGACTTAGAACTGAGAAGATTTTTGACACCTAACACTCGATTCCCCTTCATACAGAAACATCTTCAATTACCTCATGTTATT TTGAAACTTCATGATCAAAGTTCTTTCTCATCTGTTCCAATTACATTGAAGTTCCTTTTGACTCTTGCACGTGTGAGAGGAGGTGTTGAAATGCTCCTTA GTGCCGGTTTCTTCTCATCTCTTAGAGCTTTGTTTGCATATTCATCCGGTGTTGTGCCTTCCACAATTATGACAAATGATAAGGTCTTCATAAAACATTC TGACAAAACAGAAAAGCCTCAAACTATCTGGGGCCTTGGCTTGGCAGTGGTCGTAGCTATGATTCACTCGTTAGGAGACAGTTCTTATACTGAGATTCTG GACAAGGTGATTCCTTGTGTTTTATCAGAGAAAGCTGAACTGATTTCTTATTATATCAGTGCACCTGATTTTCCATCTGATAGTCGTGACAAGAAAAGAC CACTGGCTCAAAGGACACAGACTTCTATGAGTGCTCTTAAAGAAACAGAACATACTCTCATGTTGATGTGTGTCATGAAAGAAATGGATTCAGAGCTGCT GGAGAAAAGTATTCATCTATTAGCCTTTATTAAGGAGTTAGAATTCTGCAAGAAACCATCATTTTTAAAAAGCAGGAATGGATTGTTTTCTCTTCCACCT CTCTGTTGTGCATCAAAGCCCATGTCTTCTGCTTTCTCAGTCATCACTACTGCTACTGTAGGCAAGGGCCATTCAACTAAATTACCAATCCAGATCTCTT TTCTTCTCTTGAAATACCTCTGTATGGAAACAGAGGGCGCTGCTAAAAGATCAGAGGAAGTGGGGTTTGCTGATCTAACTCAGATTCCTGAGCTGCCAAT GCCGGAGATATTGCATGGCTTGCAGGATCAGGCAGTTGCTGTTGTTCCGGAACTTTGTGGTTCAAACAAATCAAAGTACATCGATCCTGAAATCCAGCCA GTCTGTCCCTTACTACTACCGATAGTGGAGATGGCCCTATATTTGGAGTTCTGCGTTTTACAGATTTGTGGAATAAGCCCTGTATTAGGGCGTGTGGAGG AATTTTCGAAGGAAGCAAAATAG
AA sequence Show only first row Show all	>Potri.004G168700.2 pacid=42794495 polypeptide=Potri.004G168702.1.p locus=Potri.004G168700 ID=Potri.004G168700.2.v4.1 annot-version=v4.1 MSIPKTVDSSLRSDSFTAILTDLENASLSLSLFLFAKKLKENHAWLVETLSLFKKLNAASRLPDTFWLCVSSLSDTFTYRGIQVAAARVLSMLFITAYYI EPNSSGNVCLGLDDKQIADIRHSVKSTLVKQLDQNGDLFVAKVNLLTAATHYQVATSLFIVHVMGKLVIGNAGSLSVSLVEKIRIAFNTCDTVFNWASNS LYLVNCLMSFVHFKVDSSLAIPSRVTLHLFSLGATVELEVKELKGLMLTDLYYHLQGKLEGCKIGPGPFKELSWYLVESNCLLSYQHKYGDEHYGKIFTY WKASKAITQTMLECLKDANLKVLIASSKLSALKAVLTALSMCEDNNKATTEVKIPDRLCFSCIDNMCKSFLTTVESLAPVLDIINFLAAKAELILNLMRS AQSNLSLSICTLFLKMSGSGLKLLNGFRSSVTGVKTIKLLLMLLLLALEIRLLPILCNCITATECSSLSLATIDLELRRFLTPNTRFPFIQKHLQLPHVI LKLHDQSSFSSVPITLKFLLTLARVRGGVEMLLSAGFFSSLRALFAYSSGVVPSTIMTNDKVFIKHSDKTEKPQTIWGLGLAVVVAMIHSLGDSSYTEIL DKVIPCVLSEKAELISYYISAPDFPSDSRDKKRPLAQRTQTSMSALKETEHTLMLMCVMKEMDSELLEKSIHLLAFIKELEFCKKPSFLKSRNGLFSLPP LCCASKPMSSAFSVITTATVGKGHSTKLPIQISFLLLKYLCMETEGAAKRSEEVGFADLTQIPELPMPEILHGLQDQAVAVVPELCGSNKSKYIDPEIQP VCPLLLPIVEMALYLEFCVLQICGISPVLGRVEEFSKEAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38760			Protein of unknown function (D...		Potri.004G168700 [exp]	0	1
AT1G26330			DNA binding (.1.2)		Potri.008G097700 [exp]	9.16	0.8484
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	9.94	0.8656
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195100 [exp]	10.67	0.8052
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	12.60	0.7907	CHR919
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Potri.011G062100 [exp]	19.36	0.8282
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Potri.014G050200 [exp]	20.61	0.8252
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	21.07	0.8587
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	27.60	0.8517
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	32.64	0.8323
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	33.16	0.8364

Compare expression of checked genes

Potri.004G168700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.