Plant FIBer expression Database

Potri.004G169200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
AT2G20515 42 / 9e-05 unknown protein
AT1G29140 41 / 0.0003 Pollen Ole e 1 allergen and extensin family protein (.1)
AT5G45880 40 / 0.0009 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G224600
[exp]
49 / 8e-07 AT2G20515 177 / 8e-58 unknown protein
Potri.002G038200
[exp]
45 / 1e-05 AT2G20515 189 / 2e-62 unknown protein
Potri.002G060800
[exp]
46 / 2e-05 AT2G42840 167 / 4e-50 protodermal factor 1 (.1)
Potri.005G200900
[exp]
44 / 7e-05 AT2G42840 163 / 4e-48 protodermal factor 1 (.1)
Potri.002G093100
[exp]
42 / 0.0001 AT4G08685 199 / 3e-66 Pollen Ole e 1 allergen and extensin family protein (.1)
Potri.017G068400
[exp]
41 / 0.0004 AT5G41050 172 / 3e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026279
[exp]
335 / 3e-114 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10042394
[exp]
305 / 2e-102 AT2G16630 281 / 4e-93 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10024890
[exp]
47 / 5e-06 AT2G20515 154 / 2e-48 unknown protein
Lus10022928
[exp]
45 / 9e-06 AT2G20515 173 / 3e-56 unknown protein
Lus10007352
[exp]
41 / 0.0001 AT2G42840 132 / 3e-39 protodermal factor 1 (.1)
Lus10007351
[exp]
44 / 0.0002 AT2G42840 170 / 5e-51 protodermal factor 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0287 Transthyretin PF01190 Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence
>Potri.004G169200.2 pacid=42795336 polypeptide=Potri.004G169200.2.p locus=Potri.004G169200 ID=Potri.004G169200.2.v4.1 annot-version=v4.1
ATGACATCTCTACTCATTTACTTCGTTTTCTTGACAATTGCTGCGGTGTTCATAACATCAAGCCTTTATATTCTTCTCCTTAAATCTTGGTTGTGTTTCC
TGTATCTATCAAGGAACATGGATTGGTCACACAAACTTCTTTTCTGTGTTTTTCTTATTTTTGCTGCAGCCATTGGTGGAACTCAAGCTGATGCCACAGT
CACCGGCACTGTCTTTTGTGACCAATGCAAGGATGGCCAAGTATCCCTTTTTGACTATCCCATTTATGGAATCAAAGTTACAATGACCTGTGCTGATGCT
AGTGGTCAAATCACAATGTCAAGGGAAGAGACCACAAATTGGTTTGGAAACTATGTAATGACGTTTGATGGCAGCCCAGATTTGAGCAATTGTTATGCTC
AGGTTTCAAGCAGTGGTCAGGGTTCAAATGCCTGTGGTGCAGCAGCTGGTCCTGCCCAAAAGCTTAGACTAACGTTCAGGATGTTTGATATGGAGTTTTA
CGCGGTGGATTCTTTGCTAACTGAGCCTTCAGCCTCCATGTCTTTTTGTCCAAGGTCTGTGAACCCAGTGCCTGCACCTGTAACACCTGTAACACCTGTA
AGGCCTCCAGTAACTCCTACAACACCTCCCCCTGCTTTCAGGCTTCCTCGAATGCCTCCACTGCCTCCACTGCCTCCTATGTCACCAGTTCCCATCCTAG
AAGCATCAGCATGTCCACACCAGAGCTGGACTATGCCAGAGTACAAATGCTACTGGAGGGCAGTGAGCCCTGACATGAAGGTAGCTGTTGTCTTCGGGTT
GCTCGCGGCTAGAAGATACGGAACAGATATGACATTATGGCAAGGCTTGCAAGGGAGAGGTGACCCGTACAGGACTCTCCTGAGGGAAGGAACAGCTGCT
CTCCTCAATTCCTATAACAGCATTGAGTTCCCTTACAATGCAATCAGTGTGGTCACACGCATGAACTGGGCCTTGATGGGTTCCCAAAGGAGTGTCCTCC
TGACAGCTTTGAGATTCATGAGGGCAAATTCTGGTTATGGCAGAGTCACCTGCAAATTCAACACTTGCAAATGA
AA sequence
>Potri.004G169200.2 pacid=42795336 polypeptide=Potri.004G169200.2.p locus=Potri.004G169200 ID=Potri.004G169200.2.v4.1 annot-version=v4.1
MTSLLIYFVFLTIAAVFITSSLYILLLKSWLCFLYLSRNMDWSHKLLFCVFLIFAAAIGGTQADATVTGTVFCDQCKDGQVSLFDYPIYGIKVTMTCADA
SGQITMSREETTNWFGNYVMTFDGSPDLSNCYAQVSSSGQGSNACGAAAGPAQKLRLTFRMFDMEFYAVDSLLTEPSASMSFCPRSVNPVPAPVTPVTPV
RPPVTPTTPPPAFRLPRMPPLPPLPPMSPVPILEASACPHQSWTMPEYKCYWRAVSPDMKVAVVFGLLAARRYGTDMTLWQGLQGRGDPYRTLLREGTAA
LLNSYNSIEFPYNAISVVTRMNWALMGSQRSVLLTALRFMRANSGYGRVTCKFNTCK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16630 Pollen Ole e 1 allergen and ex... Potri.004G169200
[exp]
0 1
AT5G25610 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, ... Potri.018G036700
[exp]
2.44 0.9621
AT1G02205 CER1 ECERIFERUM 1, Fatty acid hydro... Potri.014G180300
[exp]
2.44 0.9733 CER1.1
AT1G52855 unknown protein Potri.013G145100
[exp]
3.60 0.9461
AT2G38540 ATLTP1, LP1 ARABIDOPSIS THALIANA LIPID TRA... Potri.004G086600
[exp]
5.83 0.9720 Pt-MALD3.1
AT5G20900 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 1... Potri.018G047100
[exp]
12.64 0.9334
AT3G05975 Late embryogenesis abundant (L... Potri.016G142200
[exp]
16.43 0.9398
Potri.007G068000
[exp]
16.61 0.9655
AT5G17540 HXXXD-type acyl-transferase fa... Potri.003G019900
[exp]
18.30 0.9623
AT1G65450 HXXXD-type acyl-transferase fa... Potri.010G180000
[exp]
18.86 0.9645
AT3G49190 O-acyltransferase (WSD1-like) ... Potri.007G139600
[exp]
25.45 0.9512

Potri.004G169200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.