Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 493 / 1e-171 Amidase family protein (.1) AT5G07360 112 / 7e-26 Amidase family protein (.1.2) AT3G25660 105 / 5e-24 Amidase family protein (.1) AT5G64440 61 / 1e-09 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 52 / 8e-07 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 44 / 0.0002 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130400 [exp] 753 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.009G130500 [exp] 659 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 554 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 536 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 536 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 469 / 2e-163 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.015G109400 [exp] 114 / 1e-26 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 107 / 2e-24 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.005G070300 [exp] 95 / 2e-20 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027852 [exp] 672 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10027853 [exp] 653 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10025066 [exp] 530 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002805 [exp] 512 / 6e-180 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10002804 [exp] 376 / 1e-124 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10034477 [exp] 140 / 5e-37 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10007361 [exp] 120 / 1e-28 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 119 / 3e-28 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10032519 [exp] 116 / 2e-27 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 112 / 4e-26 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.004G169300.1 pacid=42795391 polypeptide=Potri.004G169300.1.p locus=Potri.004G169300 ID=Potri.004G169300.1.v4.1 annot-version=v4.1 ATGAAGATCCTCAAAAACCCAGCAAGGAGTCTCCCCTCTCTATGTCCATTAACGATTTTTCTACTTCTCCTTTTTGTCAACACAATAAAGGGTTCACCAT TTTCAATCCAAGAAGCCACAATCCAAGAAATCCAACAAGCATTTGCTCAAAACAAACTAACTTCAAAACAGCTAGTCAACTTCTACTTAGATAGAATCCA AGAACTGAACCCTTTACTTCACAGTGTACTAGAAGTCAATCCAGACGCATTAGAACAAGCTGGAAAGGCTGATGAAGATAGGGAAAGAAACAAGGGCAAG CGGTTCTTAGGGGACTTGCATGGGATTCCAGTGTTGTTGAAGGACAGTATAGGGACTAAAGATAAGCTGAACACAACTTGTGGGTCATATGCTTTGGTGG GATCAGAGGTTGCTCGTGATGCCCACGTGGTGGAGAAGTTGAGGAATGCTGGTGCTGTGATTCTAGGGAAGGCCAGTCTTAGTGAGTGGTATAATTGTAG GTCTTTTGACATTCCTGATGGTTGGTGTGCTAGAGGTGGCCTAGCTAAGAATCCTTATGTCGAATCGGCAGATCCATGTGGTTCAAGCAGTGGATCAGCA ATATCAGTGGCTGCAAATATGGTGGCAGTATCACTAGGGACCGAAACTGATGGTTCTATCATCTGCCCTGCTGATCACAACTCAGTTGTTGGGCTCAAGC CAACAGTTGGCCTCACTAGTCGGGCTGGTGTCATCCCAATTTCGCCTCGCCAGGACACCATTGGGCCTATATGCAGGACAGTGTCAGATGCAGTGTATGT GCTTGATGCAATTGTTGGTTTTGATCCAAGAGACTCTCAAGCAACAACCAAAGCTGCTGAGTTTATACCTGCTGGTGGTTACAAACAGTTTCTGAAGAAG GATGGGCTCAAAGGGAAGAGAGTGGGCATAGTGAGAAATCCATTTTTGGACTCCTTCAACGATTCAACTGTTATCTCAACATTCAACCACCATCTGGAAG TGTTAAGGCAAGGTGGTGCAAATATAGTGGATAATCTTCAAATAGACAATATTGATGTCATTTTGGATCCATATCGAAGCGGCGAAGTAATTGTAATGCT AGCTGAGTTCAAGCTCACAATCAAACAGTACCTTGAAGAACTAATAAAATCTCCTGTGAGGTCATTGGCAGACATCATCGCTTTCAACAACAATAATCCT GATCTGGAAAGCATGAGCAAGTATGGTCAGGAACTACTCCTTGCTGCGGAGATGACAAATGGGCTTGGAGAGGAAGAGATGAAGTTAGTGAAGTTAATGG AACAACTATCAGAAGAAGGATTTGAAAAGATGATGAAAGAGAATGACTTGGATGCCATGCTGACACTTGGTGTGGATGTTTCTACAGTGCTAGCTATTGG AGGGTACCCTGCACTTACAGTCCCAGCTGGGTATGACAGCAAGGGAAAGCCATTTGGGATCTGTTTTGGAGGATTAAAGGGAATGGAACCAAAGCTGATT GAGGTTGCTTATGCTTTTGAGCAGGCTACCCTGTCTCGCAAGGCGGCTCCTTCTCTTTGGACTTGA
AA sequence Show only first row Show all	>Potri.004G169300.1 pacid=42795391 polypeptide=Potri.004G169300.1.p locus=Potri.004G169300 ID=Potri.004G169300.1.v4.1 annot-version=v4.1 MKILKNPARSLPSLCPLTIFLLLLFVNTIKGSPFSIQEATIQEIQQAFAQNKLTSKQLVNFYLDRIQELNPLLHSVLEVNPDALEQAGKADEDRERNKGK RFLGDLHGIPVLLKDSIGTKDKLNTTCGSYALVGSEVARDAHVVEKLRNAGAVILGKASLSEWYNCRSFDIPDGWCARGGLAKNPYVESADPCGSSSGSA ISVAANMVAVSLGTETDGSIICPADHNSVVGLKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVYVLDAIVGFDPRDSQATTKAAEFIPAGGYKQFLKK DGLKGKRVGIVRNPFLDSFNDSTVISTFNHHLEVLRQGGANIVDNLQIDNIDVILDPYRSGEVIVMLAEFKLTIKQYLEELIKSPVRSLADIIAFNNNNP DLESMSKYGQELLLAAEMTNGLGEEEMKLVKLMEQLSEEGFEKMMKENDLDAMLTLGVDVSTVLAIGGYPALTVPAGYDSKGKPFGICFGGLKGMEPKLI EVAYAFEQATLSRKAAPSLWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34880			Amidase family protein (.1)		Potri.004G169300 [exp]	0	1
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G013900 [exp]	3.31	0.9464	AMT2
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	13.85	0.9053
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Potri.002G254100 [exp]	16.52	0.9241	PtrcGrx_S12
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	16.94	0.9016	MYB165
					Potri.004G212550 [exp]	18.16	0.9040
AT2G17710			unknown protein		Potri.005G107800 [exp]	18.33	0.8976
AT5G28750			Bacterial sec-independent tran...		Potri.005G053400 [exp]	18.43	0.9034
AT1G26761			Arabinanase/levansucrase/inver...		Potri.008G089800 [exp]	19.94	0.9264
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G107700 [exp]	20.59	0.8760
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Potri.017G015800 [exp]	20.78	0.8893

Compare expression of checked genes

Potri.004G169300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.