Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20190 407 / 3e-137 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 387 / 2e-129 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 354 / 6e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 350 / 3e-115 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 343 / 8e-113 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G20690 245 / 6e-75 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 233 / 7e-71 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 216 / 6e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 204 / 9e-60 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 204 / 1e-59 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002700 [exp] 765 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 640 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 405 / 4e-137 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 395 / 4e-133 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 381 / 6e-127 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 372 / 2e-123 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 257 / 1e-79 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 224 / 4e-67 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G117200 [exp] 223 / 1e-66 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035710 [exp] 439 / 2e-152 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 420 / 4e-147 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 394 / 3e-132 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 379 / 1e-126 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 368 / 3e-122 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 352 / 2e-118 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 341 / 3e-111 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 335 / 8e-109 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 317 / 1e-101 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 247 / 8e-79 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G170274.1 pacid=42794338 polypeptide=Potri.004G170274.1.p locus=Potri.004G170274 ID=Potri.004G170274.1.v4.1 annot-version=v4.1 ATGCTAGCAGCCATTGCTTTTGCTTTCCTTTTGGTTTCCCGAAAAAAATGTAAAAGTCGAATACAGAGGACAGCATCATCACCAGAGGAGAACTCCAACA AAATGGTGGCTTCTTATTATAGAGATGTACATCGTGAATTGTCAGAGACTAGTTCTCATGCAAAGAAGGCTGATCATGGAAAGTTGACATTCCTGAAGGA TGACATTGAGAAGTTTGATTTGCAAGACTTGCTTACAGCCTCAGCAGAAGTTTTGGGGAGTGGGACATTTGGATCTTCATATAAGGCAGTTGTCGTTGGA CAACCTGTGGTTGTTAAGAGGTATCGGCATATGAGCAATGTGGGGAGAGAAGAGTTCCATGAGCACATGAGAAGGTTAGGGAGGTTGAAACATCCCAACT TGCTGCCTCTTGCGGCATATTACAATAGGAGGGATGAGAAGCATTTGGTTACAGAGTTCGCTGAGAATGGTAGCCTGGCTAGTCACCTTCATGGAAATCA TTCACCGGAAGAAGATGGACTTCATTGGCACATCCGCTTGAAAATCGTCAAAGGAGTAGCCAGGGGTTTGGCTTTTCTCTACAATGAGCTTCCTATAATT GCTCCTCATGGACACCTAAAATCTTCCAACGTGCTCCTAGACGAGTCGTTCGAGCCTCTCTTGACAGATTATGCTCTAAGACCCGTGGTCAACCCTGAAC ATGCCCACATGTTCATGATGGCTTACAAGTCACCTGAGTATGCACAACAAAGCCGGACATCAAACAAGACAGATATATGGAGTTTTGGCATTTTAATACT GGAGATGTTAACTGGCAAGTTCCCTGAGAACTATCTAACACCATGTTATAACAGTGATGCAGACTTAGCAACTTCGGTTAATAACATGGTGAAGGAAAAG CGAACAAGTGAAGTGTTTGATAAGGAAATAGTGGGAACAAAATATAGCAAGGGAGAAATGATAAAGCTTTTGAAGATTGGATTAAGTTGCTGTGAAGAGG ATGTAGAGAGAAGGTTGGACATTAAGGAAGTTGTCGAGAAGATTGATGTACTGAAAGAAGGAGACGAAGATGAAGAACTTTACGGGAGTGAAGGGAATGC ATATAGTGTTAGAGGGAATGACCAGGAAGGATATTCCTTCACAGTGGATCGATGA
AA sequence Show only first row Show all	>Potri.004G170274.1 pacid=42794338 polypeptide=Potri.004G170274.1.p locus=Potri.004G170274 ID=Potri.004G170274.1.v4.1 annot-version=v4.1 MLAAIAFAFLLVSRKKCKSRIQRTASSPEENSNKMVASYYRDVHRELSETSSHAKKADHGKLTFLKDDIEKFDLQDLLTASAEVLGSGTFGSSYKAVVVG QPVVVKRYRHMSNVGREEFHEHMRRLGRLKHPNLLPLAAYYNRRDEKHLVTEFAENGSLASHLHGNHSPEEDGLHWHIRLKIVKGVARGLAFLYNELPII APHGHLKSSNVLLDESFEPLLTDYALRPVVNPEHAHMFMMAYKSPEYAQQSRTSNKTDIWSFGILILEMLTGKFPENYLTPCYNSDADLATSVNNMVKEK RTSEVFDKEIVGTKYSKGEMIKLLKIGLSCCEEDVERRLDIKEVVEKIDVLKEGDEDEELYGSEGNAYSVRGNDQEGYSFTVDR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	0	1
AT5G16330			NC domain-containing protein-r...		Potri.005G056300 [exp]	3.87	0.7440
AT3G60650			unknown protein		Potri.002G144400 [exp]	4.69	0.6749
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	5.47	0.6869
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	7.54	0.7068
					Potri.010G080267 [exp]	10.19	0.6811
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Potri.001G370600 [exp]	10.95	0.6771
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107800 [exp]	15.55	0.6338	Pt-LEA1.4
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	16.43	0.6519
AT4G16447			unknown protein		Potri.011G086300 [exp]	19.77	0.6226
AT3G06240			F-box family protein (.1)		Potri.008G199601 [exp]	27.71	0.5151

Compare expression of checked genes

Potri.004G170274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.