Plant FIBer expression Database

Potri.004G170350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G111900
[exp]
54 / 1e-09 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1)
Potri.001G121300
[exp]
40 / 9e-05 AT4G31550 145 / 5e-41 WRKY DNA-binding protein 11 (.1.2)
Potri.014G003451
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G170350.5 pacid=42793939 polypeptide=Potri.004G170350.5.p locus=Potri.004G170350 ID=Potri.004G170350.5.v4.1 annot-version=v4.1
ATGATCACGCCCTTTCTCTCCTCAGTCAGCTTCTTGGTCTTCTTTCAAGGATCCGACGCTGATAGTCTACGGTGCTGGCCAAAACTTCTGTACCGATGCT
GCTGGAAACAGAATTTAAAAGAGCTGCCAATTCAAGTTTCTTTGTGCATTTTGGGAACATGGAGCAGAAGAAAGAAACTTACTTTGCAGGTGCAAACAGT
TCTAGCTTGGAAAATACGGTTGTCCTATGGTTTGATTTGGTTGTTAAATACGAAGCATCATGTTGGGAGATTGAAATGCAATTTTGGAGTGATTGTGTTC
CCCTTTATAAGCCACAACTAA
AA sequence
>Potri.004G170350.5 pacid=42793939 polypeptide=Potri.004G170350.5.p locus=Potri.004G170350 ID=Potri.004G170350.5.v4.1 annot-version=v4.1
MITPFLSSVSFLVFFQGSDADSLRCWPKLLYRCCWKQNLKELPIQVSLCILGTWSRRKKLTLQVQTVLAWKIRLSYGLIWLLNTKHHVGRLKCNFGVIVF
PFISHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G170350
[exp]
0 1
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
2.00 0.9351
AT1G51550 Kelch repeat-containing F-box ... Potri.008G006300
[exp]
2.44 0.9049
Potri.006G143901
[exp]
5.47 0.8627
AT3G53690 RING/U-box superfamily protein... Potri.019G093600
[exp]
7.07 0.8684
AT1G05160 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, ... Potri.014G179100
[exp]
11.48 0.8586 KAO2.2,KAO2
AT1G15200 protein-protein interaction re... Potri.001G208200
[exp]
12.40 0.8961
AT1G33500 unknown protein Potri.013G095400
[exp]
14.07 0.8776
AT5G26594 ARR24 response regulator 24 (.1) Potri.001G051000
[exp]
14.83 0.8746
AT3G14610 CYP72A7 "cytochrome P450, family 72, s... Potri.005G126600
[exp]
14.96 0.8981
Potri.001G444100
[exp]
16.12 0.8649

Potri.004G170350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.