Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78940 787 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 766 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 714 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 709 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 665 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 619 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 598 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 554 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 547 / 0 protein kinase family protein (.1) AT1G17540 417 / 7e-135 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001700 [exp] 1338 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.007G001900 [exp] 1139 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 1055 / 0 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 702 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 679 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 578 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 570 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 474 / 2e-155 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170943 [exp] 385 / 3e-130 AT1G78940 208 / 1e-63 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037298 [exp] 785 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 780 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 729 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 674 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 671 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 649 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 648 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 588 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 552 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 514 / 3e-175 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Potri.004G170742.1 pacid=42796591 polypeptide=Potri.004G170742.1.p locus=Potri.004G170742 ID=Potri.004G170742.1.v4.1 annot-version=v4.1 ATGTGGCTCTCGAAGGGACACGGTACCAAGAAGGGAGGAGAAGGAAATGGGCTGGTGGCAGTTGCTGTAGATAAAGACAAGGGGAGCCAAAACGCATTGA AATGGACTGTGGAAAATCTTCTCTCCAAGGGCCAAAATCTTATTCTAATCCATGTTTTTTATAAATCATCATCATCATTTGTTACAAGCCATGGATCGCC TGGTGATTATTCTTCACCAGGGAAGCAGCAGCTTGAGAAGATGGCAAAGGATCTCTTCCTTACATTTCGATGCTATTGTACTCGCAAAGATGTACATTGC CTTGATGTTGCAGTTGAAAGCACAGATATAGCAAAAGCAATAACAGAATATGTTTCCCATGCAGCAATCGAGACTTTGGTTCTCGGAACCCCATCACGGA GTGGATTTATGAGAAAATTCAAGGCAGATGTACCAAGCACTGTGTCAAGAGGGGCACCTGATTTCTGTACTGTGTATGTTGTATCAAAAGGAAAGGTCTC TACAATGAGAAATGCTTCTCGTCCTGCCCCATTCGCCTCCCCACTTCTACATCAAATACAAAACCAACAGAACCAAAATAGTCCAAGGGTAGATTCTTCT GAAGCACTATACAAACATGTTTGGAGCATAAAAGAGAGAACGATGCCAGTCAAGCCTCGTATCTCAGTTGGTGAAACCTTCAGGTCACCATTAGGAAGAG GAGGACAGGGTCATAGTGTAAAATCATTTGCAGATCTCATGTCAGAAACTGACATATCATTTGTCAGCTCCAGCAGGCCAAGCACTGACCGCATGTCTTC TGTAACCTATGATTTCATGGATTCTGGAGCAACCCCTCGGTTTTCAACTAGCTCAGACACTAGCTTTGCATCTATACAATCAGGACCAAAGTTCTTTAGC CCCAATTACCATCAGGGATTTTCATCAATTTCACAAGATAGCGGCAGAACATCTTTTACTGGTTCAACACACAGCCTGGATGACATGGAGTCTGAGATGA GGAGGCTAAAACTAGAGTTGAAGCAAACAATGGACTTGTACAACGCAGCATGTAGAGAAGCACTTACAGCAAAACGGAAGGCAACAGAGCTGAATCGCTG GAGAATAGAAGAAGAACGAAGATTGGAAGAGTCTAGGTTTTCTGAAGAAGCTGCACTGTCGATTATAGAGCAAGAGAAAGCCAGGTGCAGAGAAGCCATA GACGCTGCTGAAGAAGCTGAGAAGAGAGCTGCAATAGAAGCGCAAAGGAGACTCAACATAGAGAAAACCCTCAAAGAAGCTGCAAAAACGAAAAGAGCAA AGGATAATCTATCTTATCATGGTATCAGATACAGGAGATACAGTATTGAGGAGATTGAAGTAGCAACACAATACTTTTCGGAATCAAAGAAGATTGGGGA AGGAGGTTATGGCCCAGTTTACAACTGTTATCTTGATCAGACACCAGTTGCAGTCAAGGTTTTACGTCCTGATGCAACCCAAGGAAGGTCTCAATTTCGA AGAGAGGTTGAAGTGCTTAGCTTAATACGGCATCCAAACATGGTACTGCTTCTAGGAGCCTGCCCAGAGTATGGTATTCTAGTCTATGAATACATGGCAA AAGGAAGCTTAGAAGACTGTCTCTTCAAGAGAGGGAATACAGCAGCTCTTTCTTGGCAAATCAGGTTCCGAATTGCAGCTGAGATAGCCACAGGTCTGCT CTTTCTCCATCAGACCAAGCCAGAGCCAGTGGTTCACCGTGACCTCAAGCCAGGAAACATTTTGCTAGACAACAATTACACCAGTAAGATTAGTGATAAT GTAACACAATACCACATGACATCAGCTGCTGGAACTTTCTGCTATATTGATCCAGAGTATCAACAAACTGGAATGCTTGGTGTGAAATCTGATGTATATT CCTTAGGGATCTTGCTTCTGCAAGTCATAACAGCCAAGCCACCAATGGGCTTGACTCACATTGTTGAACAAGCAATTGAAAATGAGACGCTCAAAGAAGT TCTAGACTCAGATGTGCCTGATTGGCCAATTGAAGAGACTTTATGGTTTGCAAAGCTTGCACTCCAATGTGCAGAACTGAGACGGAAAGACAGGCCAGAT CTTGGCACAGAAGTCTTGCCAGAGCTCAACAGACTGAGAGATTATGCTGAAGAAAAGATGAACTACCTTTTTTTAGCTAAAGCTTTCGGCCCCTCCCCCA ACCACAGCCTAGCTTCAATAACTCTTCCCATCAGCCAAATCTCAATAACTCCCACCAACCTTAGCCAACCTTCTGCAACTCCCACCAACCTCAGTCAAGT TTCAATAACTCAGGAAGCAATGAGCAATACTGTAGTTGGAAATCTAGGAAGCCCGAAGAGCCAATCAAGCAGTTAA
AA sequence Show only first row Show all	>Potri.004G170742.1 pacid=42796591 polypeptide=Potri.004G170742.1.p locus=Potri.004G170742 ID=Potri.004G170742.1.v4.1 annot-version=v4.1 MWLSKGHGTKKGGEGNGLVAVAVDKDKGSQNALKWTVENLLSKGQNLILIHVFYKSSSSFVTSHGSPGDYSSPGKQQLEKMAKDLFLTFRCYCTRKDVHC LDVAVESTDIAKAITEYVSHAAIETLVLGTPSRSGFMRKFKADVPSTVSRGAPDFCTVYVVSKGKVSTMRNASRPAPFASPLLHQIQNQQNQNSPRVDSS EALYKHVWSIKERTMPVKPRISVGETFRSPLGRGGQGHSVKSFADLMSETDISFVSSSRPSTDRMSSVTYDFMDSGATPRFSTSSDTSFASIQSGPKFFS PNYHQGFSSISQDSGRTSFTGSTHSLDDMESEMRRLKLELKQTMDLYNAACREALTAKRKATELNRWRIEEERRLEESRFSEEAALSIIEQEKARCREAI DAAEEAEKRAAIEAQRRLNIEKTLKEAAKTKRAKDNLSYHGIRYRRYSIEEIEVATQYFSESKKIGEGGYGPVYNCYLDQTPVAVKVLRPDATQGRSQFR REVEVLSLIRHPNMVLLLGACPEYGILVYEYMAKGSLEDCLFKRGNTAALSWQIRFRIAAEIATGLLFLHQTKPEPVVHRDLKPGNILLDNNYTSKISDN VTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGILLLQVITAKPPMGLTHIVEQAIENETLKEVLDSDVPDWPIEETLWFAKLALQCAELRRKDRPD LGTEVLPELNRLRDYAEEKMNYLFLAKAFGPSPNHSLASITLPISQISITPTNLSQPSATPTNLSQVSITQEAMSNTVVGNLGSPKSQSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78940			Protein kinase protein with ad...		Potri.004G170742 [exp]	0	1
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	3.46	0.8708
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	4.24	0.9293
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	12.40	0.8290
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	15.29	0.8335
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	19.44	0.8415
					Potri.004G076300 [exp]	20.12	0.8521
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	20.19	0.7856
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	23.08	0.7951
AT3G12590			unknown protein		Potri.008G052700 [exp]	23.81	0.8132
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.010G065800 [exp]	26.83	0.7852

Compare expression of checked genes

Potri.004G170742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.