Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78940 583 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 576 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 530 / 2e-180 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 528 / 9e-180 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 477 / 5e-160 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 455 / 7e-152 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 439 / 5e-146 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 387 / 8e-126 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 380 / 5e-123 protein kinase family protein (.1) AT1G17540 251 / 7e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G170742 [exp] 1051 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 965 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.007G001900 [exp] 864 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G002400 [exp] 521 / 1e-177 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 488 / 5e-165 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G061600 [exp] 408 / 2e-133 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 403 / 3e-131 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 391 / 8e-126 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 229 / 8e-66 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037298 [exp] 582 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10033340 [exp] 570 / 0 AT1G16760 800 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 550 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 495 / 8e-167 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 487 / 1e-163 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 471 / 1e-157 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 466 / 2e-155 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 446 / 3e-146 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 384 / 8e-127 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 370 / 3e-121 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G170901.2 pacid=42795473 polypeptide=Potri.004G170901.2.p locus=Potri.004G170901 ID=Potri.004G170901.2.v4.1 annot-version=v4.1 ATGTGGCTCTCGAAGGGACACGGTACCAAGAAGGGAGGAGAAGGAAATGGGCTGGTGGCAGTTGCTGTAGATAAAGACAAGGGGAGCCAAAACGCATTGA AATGGACTGTGGAAAATCTTCTCTCCAAGGGCCAAAATCTTATTCTAATCCATGTTTTTTATAAATCATCATCATCATTTGTTACAAGCCATGGATCGCC TGGTGATTATTCTTCACCAGGGAAGCAGCAGCTTGAGAAGATGGCAAAGGATCTCTTCCTTACATTTCGATGCTATTGTACTCGCAAAGATGTACATTGC CTTGATGTTGCAGTTGAAAGCACAGATATAGCAAAAGCAATAACAGAATATGTTTCCCATGCAGCAATCGAGACTTTGGTTCTCGGAACCCCATCACGGA GTGGATTTATGAGAAAATTCAAGGCAGATGTACCAAGCACTGTGTCAAGAGGGGCACCTGATTTCTGTACTGTGTATGTTGTATCAAAAGGAAAGGTCTC TACAATGAGAAATGCTTCTCGTCCTGCCCCATTCGCCTCCCCACTTCTACATCAAATACAAAACCAACAGAACCAAAATAGTCCAAGGGTAGATTCTTCT GAAGCACTATACAAACATGTTTGGAGCATAAAAGAGAGAACGATGCCAGTCAAGCCTCGTATCTCAGTTGGTGAAACCTTCAGGTCACCATTAGGAAGAG GAGGACAGGGTCATAGTGTAAAATCATTTGCAGATCTCATGTCAGAAACTGACATATCATTTGTCAGCTCCAGCAGGCCAAGCACTGACCGCATGTCTTC TGTAACCTATGATTTCATGGATTCTGGAGCAACCCCTCGGTTTTCAACTAGCTCAGACACTAGCTTTGCATCTATACAATCAGGACCAAAGTTCTTTAGC CCCAATTACCATCAGGGATTTTCATCAATTTCACAAGATAGCGGCAGAACATCTTTTACTGGTTCAACACACAGCCTGGATGACATGGAGTCTGAGATGA GGAGGCTAAAACTAGAGTTGAAGCAAACAATGGACTTGTACAACGCAGCATGTAGAGAAGCACTTACAGCAAAACGGAAGGCAACAGAGCTGAATCGCTG GAGAATAGAAGAAGAACGAAGATTGGAAGAGTCTAGGTTTTCTGAAGAAGCTGCACTGTCGATTATAGAGCAAGAGAAAGCCAGGTGCAGAGAAGCCATA GACGCTGCTGAAGAAGCTGAGAAGAGAGCTGCAATAGAAGCGCAAAGGAGACTCAACATAGAGAAAACCCTCAAAGAAGCTGCAAAAACGAAAAGAGCAA AGGATAATCTATCTTATCATGGTATCAGATACAGGAGATACAGTATTGAGGAGATTGAAGTAGCAACACAATACTTTTCGGAATCAAAGAAGATTGGGGA AGGAGGTTATGGCCCAGTTTACAACTGTTATCTTGATCAGACACCAGTTGCAGTCAAGGTTTTACGTCCTGATGCAACCCAAGGAAGGTCTCAATTTCGA AGAGAGGTTGAAGTGCTTAGCTTAATACGGCATCCAAACATGGTACTGCTTCTAGGAGCCTGCCCAGAGTATGGTATTCTAGTCTATGAATACATGGCAA AAGGAAGCTTAGAAGACTGTCTCTTCAAGAGAGGGAATACAGCAGCTCTTTCTTGGCAAATCAGGTTCCGAATTGCAGCTGAGATAGCCACAGGTCTGCT CTTTCTCCATCAGACCAAGCCAGAGCCAGTGGTTCACCGTGACCTCAAGCCAGGAAACATTTTGCTAGACAACAATTACACCAGTAAGATTAGTGATGTT GGTTGGCCAGGCTTGTTCCTACTACTTCTGAGAATGTAA
AA sequence Show only first row Show all	>Potri.004G170901.2 pacid=42795473 polypeptide=Potri.004G170901.2.p locus=Potri.004G170901 ID=Potri.004G170901.2.v4.1 annot-version=v4.1 MWLSKGHGTKKGGEGNGLVAVAVDKDKGSQNALKWTVENLLSKGQNLILIHVFYKSSSSFVTSHGSPGDYSSPGKQQLEKMAKDLFLTFRCYCTRKDVHC LDVAVESTDIAKAITEYVSHAAIETLVLGTPSRSGFMRKFKADVPSTVSRGAPDFCTVYVVSKGKVSTMRNASRPAPFASPLLHQIQNQQNQNSPRVDSS EALYKHVWSIKERTMPVKPRISVGETFRSPLGRGGQGHSVKSFADLMSETDISFVSSSRPSTDRMSSVTYDFMDSGATPRFSTSSDTSFASIQSGPKFFS PNYHQGFSSISQDSGRTSFTGSTHSLDDMESEMRRLKLELKQTMDLYNAACREALTAKRKATELNRWRIEEERRLEESRFSEEAALSIIEQEKARCREAI DAAEEAEKRAAIEAQRRLNIEKTLKEAAKTKRAKDNLSYHGIRYRRYSIEEIEVATQYFSESKKIGEGGYGPVYNCYLDQTPVAVKVLRPDATQGRSQFR REVEVLSLIRHPNMVLLLGACPEYGILVYEYMAKGSLEDCLFKRGNTAALSWQIRFRIAAEIATGLLFLHQTKPEPVVHRDLKPGNILLDNNYTSKISDV GWPGLFLLLLRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	0	1
AT1G78940			Protein kinase protein with ad...		Potri.004G170742 [exp]	4.24	0.9293
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.018G057000 [exp]	4.47	0.9337
AT1G78940			Protein kinase protein with ad...		Potri.014G001700 [exp]	8.60	0.9491
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	9.94	0.8954
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	15.09	0.9412
AT5G36930			Disease resistance protein (TI...		Potri.019G001602 [exp]	15.23	0.9404
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G158900 [exp]	22.04	0.9398
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	29.05	0.8733
AT4G18250			receptor serine/threonine kina...		Potri.017G009600 [exp]	30.33	0.9292
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.002G028400 [exp]	33.10	0.9356	Pt-APETALA3.1

Compare expression of checked genes

Potri.004G170901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.