Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 535 / 0 Amidase family protein (.1) AT5G07360 105 / 6e-24 Amidase family protein (.1.2) AT3G25660 90 / 5e-19 Amidase family protein (.1) AT5G64440 81 / 9e-16 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 53 / 4e-07 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130700 [exp] 777 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 629 / 0 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 623 / 0 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.009G130500 [exp] 590 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G169300 [exp] 574 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 568 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.015G109400 [exp] 109 / 3e-25 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.007G098600 [exp] 97 / 3e-21 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 89 / 1e-18 AT3G25660 766 / 0.0 Amidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002805 [exp] 636 / 0 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10025066 [exp] 612 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10027852 [exp] 558 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10027853 [exp] 541 / 0 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10034477 [exp] 192 / 2e-56 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10027854 [exp] 119 / 2e-32 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10032519 [exp] 104 / 1e-23 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 100 / 3e-22 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10020781 [exp] 94 / 4e-20 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10020468 [exp] 94 / 5e-20 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.004G171000.1 pacid=42794780 polypeptide=Potri.004G171000.1.p locus=Potri.004G171000 ID=Potri.004G171000.1.v4.1 annot-version=v4.1 ATGGTTACCAAGAAACCATTGAGTTCTTCGCTTTTCTCATCACTAATTTTCTTTCTTTTAGCAATATCATGCCATGCATTCTCGATTAGAGAAGCTAGCA TAAGTGATCTCCAACTTGCTTTTAAGCAGAAGAAGCTCACCTCAAGGCAACTAGTCGAGTTCTACGTTGGAGAAATCCATGGGCTCAATTCAGTCCTTAA AGGGGTCATAGAAATAAACCCTGATGCACTCTATCAAGCTGATAGAGCCGACTATGAGCGGAGGGTTAGGGCACCAGGTGCTCTGGTTGGCTTGCATGGC ATTCCTATCCTGCTAAAGGATAACATCGCCACCAAAGATAAGCTGAACACAACAGCTGGCTCTTTTGCGCTGCTTCGATCAGTTGTCCCTCGCGATGCAG GGGTAGTGGCAAAGTTAAGGAAATCTGGCGCTATAATTCTTGGAAAGGCTAGTTTGAGTGAGTGGGCAGCTTTCAGATCACTTAATGCACCTAATGGTTT TAGTGCTAGAGGTGGCCAAGGAAAGAATCCATATGTTCTATCAGATGATCCTTGTGGATCAAGTAGCGGATCAGCAATATCGGTAGCAGCAAATTTTGTA GCAGTATCACTAGGGACTGAGACTGATGGCTCCATCTTATGTCCATCTAATGCAAATTCGGTGGTGGGCATAAAACCAACAGTTGGTCTCACCAGCCGAG CTGGGGTTATCCCAATTTCTCCTAGACAGGACACTGTTGGGCCTATCTGCAGGACTGTATCGGATGCTGTTATCGTCCTTGATGCCATTGTAGGTGTTGA TTACAACGATGGTGCAACCCAAGAAGCATCAAAGTACATCCCACACGGCGGCTACAAACAATTTCTCAAGCCTTATGGATTGAAAGGGAAGAGACTTGGA ATAGTAAGGAATCCATTCTTGGGTTTTGCCAGTAAAGCAGAGAGTCAAGCTTTTGAGTACCATCTTCAAACACTAAGACAAGGAGGTTCAGTTATAGTTG ACCATTTGGAAATAGCCAACATCAATGCTATCTTAAATTCCACTGGGAGCGGTGAAGCAATAGCATTGCTAGCTGAGTTCAAAATATCCTTGAATACATA CTTGAAAGATCTGGTGGCTTCCCCAGTCCGAACCTTAGCCGATGTTATTGCATTCAACCAAAAATTTGCAGATCTTGAAAAGATCAACGAATTTGGTCAA GACATCTTTCTTTTAGCTCAAGCTACAAATGGGATCGGCAAAGTAGAGAAGGCAGCATTAATAAATTTAGAGAAACTGACAAGAGATGGATTTCAGAAGT TGATGCGGTATTATAAGCTAGATGCCTTGGTCACACCTGGTGCAGGTTTTGCACCTGTTCTTGCAATCGGAGGATTCCCAGGGATCAATGTCCCCGCAGG ATATGATGATAAGGGTGTGCCTTTTGGCATTAACTTTGGAGGATTGAAGGGTACAGAACCAAAGCTAATTCAGATTGCATTTGGTTTTGAGCAGGCTACT AAAATTAGAAAGCCTCCCACATTCAAGGCTTGA
AA sequence Show only first row Show all	>Potri.004G171000.1 pacid=42794780 polypeptide=Potri.004G171000.1.p locus=Potri.004G171000 ID=Potri.004G171000.1.v4.1 annot-version=v4.1 MVTKKPLSSSLFSSLIFFLLAISCHAFSIREASISDLQLAFKQKKLTSRQLVEFYVGEIHGLNSVLKGVIEINPDALYQADRADYERRVRAPGALVGLHG IPILLKDNIATKDKLNTTAGSFALLRSVVPRDAGVVAKLRKSGAIILGKASLSEWAAFRSLNAPNGFSARGGQGKNPYVLSDDPCGSSSGSAISVAANFV AVSLGTETDGSILCPSNANSVVGIKPTVGLTSRAGVIPISPRQDTVGPICRTVSDAVIVLDAIVGVDYNDGATQEASKYIPHGGYKQFLKPYGLKGKRLG IVRNPFLGFASKAESQAFEYHLQTLRQGGSVIVDHLEIANINAILNSTGSGEAIALLAEFKISLNTYLKDLVASPVRTLADVIAFNQKFADLEKINEFGQ DIFLLAQATNGIGKVEKAALINLEKLTRDGFQKLMRYYKLDALVTPGAGFAPVLAIGGFPGINVPAGYDDKGVPFGINFGGLKGTEPKLIQIAFGFEQAT KIRKPPTFKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34880			Amidase family protein (.1)		Potri.004G171000 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038000 [exp]	2.00	0.9122
					Potri.004G069101 [exp]	8.24	0.8452
AT4G20860			FAD-binding Berberine family p...		Potri.019G063400 [exp]	21.49	0.8362
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029000 [exp]	23.62	0.8591
AT1G78860			D-mannose binding lectin prote...		Potri.011G110300 [exp]	25.92	0.8981
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	31.62	0.8790
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060300 [exp]	35.42	0.8784
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	35.87	0.8518
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060200 [exp]	39.03	0.8743
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029700 [exp]	43.45	0.8489

Compare expression of checked genes

Potri.004G171000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.