Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 473 / 6e-164 Amidase family protein (.1) AT5G07360 107 / 1e-24 Amidase family protein (.1.2) AT3G25660 102 / 4e-23 Amidase family protein (.1) AT5G64440 82 / 3e-16 ATFAAH fatty acid amide hydrolase (.1) AT1G08980 59 / 3e-09 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT5G09420 47 / 2e-05 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130700 [exp] 616 / 0 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171000 [exp] 612 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.004G169300 [exp] 543 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130500 [exp] 535 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.009G130400 [exp] 521 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.004G169400 [exp] 465 / 8e-162 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.005G070300 [exp] 115 / 3e-27 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 108 / 1e-24 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.015G109400 [exp] 107 / 2e-24 AT5G07360 823 / 0.0 Amidase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025066 [exp] 607 / 0 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10027852 [exp] 518 / 1e-180 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10002805 [exp] 511 / 1e-179 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10027853 [exp] 489 / 7e-169 AT4G34880 462 / 4e-159 Amidase family protein (.1) Lus10034477 [exp] 161 / 2e-44 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10002804 [exp] 170 / 2e-34 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10032519 [exp] 112 / 4e-26 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10007361 [exp] 109 / 3e-25 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 109 / 5e-25 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10043019 [exp] 108 / 1e-24 AT5G07360 858 / 0.0 Amidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.004G171300.1 pacid=42795289 polypeptide=Potri.004G171300.1.p locus=Potri.004G171300 ID=Potri.004G171300.1.v4.1 annot-version=v4.1 ATGGCCAACAATTCTCTACTGTTTTTAATTCTTGCCTTTTTATTATTATCTGGGTTCTTTACCAAGACAAGCAGTGCCTTCTCAATTGAAGAAGCAACTA TAGATGATCTTCAACTAGCTTTTAAGCAAAACCAACTAACCTCTAGACAACTCGTTGAGTTCTACCTCAAACGGATCCGCAGACTCAATCCGCTTCTTAG AGGGGTCATAGAGGTGAACCCTGATGCACTCTTTCTAGCCGATAAGGCTGACCGAGAGCGCAAGGTCAACACCCCAGGGTCAACTGGTGGTTTGCACGGG ATTCCTATCCTGCTCAAGGACAATATTGCAACCAAAGACAAACTGAACACTACAGCTGGTTCTTATGCACTACTTGGATCAGTTGTGCCTCGGGATGCAG GTGTGGTAATGAAGTTGAGGAAAGCTGGAGCTATCATATTAGGGAAGTCTAGCTTGAGTGAGTGGGCTAATTTCAGGACAGATGGCGCACCCTCAGGTTT TTGTGGGAGAAGCGGCCAAGGAAAGAATCCATATGTTTTGTCCGCGACTCCTTGTGGGTCAAGCAGCGGGTCAGGAATATCAGTGGCAGCAAACTTGGCA GCCGTGTCACTTGGGACTGAGACTGATGGCTCCATAATATGTCCATCGAGTTACAACTCAGTTGTGGGCATCAAACCCACTGTTGGTCTCACTAGTAGAG CCGGGGTTATCCCCATCACCCCTAGACAGGACACTGTGGGGCCAATGTGCAGGACAGTATCGGACGCTGTATATGTTCTTGATGCCATTGTAGGCTTTGA TTCAAATGATGCTGCAACCAGAGAAGCAGCAAAATATATTCCAAACGGTGGCTACAGACAATTTCTTAACCCTCTTGGGCTTAAAGGGAAGAGATTGGGG ATATTGAGGACTCCATTTTACAATTCGGGCAACGATAAAGGATCCCGTCGGCATCAAACTTTTGAGCACCATTTTCAAACACTAAGACGACAAGGTGCAG TTCTCGTAGACCATTTGCAAATAAGCGACGTTGACACGATCACAGCCGGGCAGAATGGAGAATTACTTGCAACGTTGCTCGAATTCAAGCCAGCCTTGAA TGAGTATCTAGAACAGTTGGTGGCGTCTCCAGTCCGATCCTTAGCAGCTGTGATAGCCTTCAACAAAAAATTCTCCAGATTGGAAAAGACCAAGGAATAC GGTCAAGAGCTCTTCAAGAAAGCCGAGTTCTTGAGTCGAAACATAACAAACATTGATGCTACATTGAAGAAACTGGTGTCAACATTCAGCAAACTCTCGA AGAATGGCCTGGAGAAATTAATCAAGACGAACAAACTAGATGCGGTGGTGGCACCTGATTTTAGTTATGTGTTATCATTTGTTCTTGCAATTGGACAATA CCCTGGAATCAGTGTCCCTGCTGGGTATGACAGTGACGGTGTGCCTTTTGGCATTTGCTTCGGTGGACCAAAGGGTTCGGAGCCAAAACTAATTGAGATT GCTTATGGCTTTGAGACAGCTACCAAGGTTAGGAGGCCCCCTGCATTCAAGCCTTGA
AA sequence Show only first row Show all	>Potri.004G171300.1 pacid=42795289 polypeptide=Potri.004G171300.1.p locus=Potri.004G171300 ID=Potri.004G171300.1.v4.1 annot-version=v4.1 MANNSLLFLILAFLLLSGFFTKTSSAFSIEEATIDDLQLAFKQNQLTSRQLVEFYLKRIRRLNPLLRGVIEVNPDALFLADKADRERKVNTPGSTGGLHG IPILLKDNIATKDKLNTTAGSYALLGSVVPRDAGVVMKLRKAGAIILGKSSLSEWANFRTDGAPSGFCGRSGQGKNPYVLSATPCGSSSGSGISVAANLA AVSLGTETDGSIICPSSYNSVVGIKPTVGLTSRAGVIPITPRQDTVGPMCRTVSDAVYVLDAIVGFDSNDAATREAAKYIPNGGYRQFLNPLGLKGKRLG ILRTPFYNSGNDKGSRRHQTFEHHFQTLRRQGAVLVDHLQISDVDTITAGQNGELLATLLEFKPALNEYLEQLVASPVRSLAAVIAFNKKFSRLEKTKEY GQELFKKAEFLSRNITNIDATLKKLVSTFSKLSKNGLEKLIKTNKLDAVVAPDFSYVLSFVLAIGQYPGISVPAGYDSDGVPFGICFGGPKGSEPKLIEI AYGFETATKVRRPPAFKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34880			Amidase family protein (.1)		Potri.004G171300 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050300 [exp]	2.00	0.9431
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.001G097901 [exp]	6.48	0.9089
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	7.34	0.9095
AT3G50180			Plant protein of unknown funct...		Potri.016G039800 [exp]	8.06	0.9161
AT1G03670			ankyrin repeat family protein ...		Potri.019G101500 [exp]	12.48	0.9217
AT4G31980			unknown protein		Potri.003G208100 [exp]	13.74	0.8813
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108200 [exp]	13.85	0.8693
AT1G72125			Major facilitator superfamily ...		Potri.017G145550 [exp]	14.00	0.8690
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050501 [exp]	14.62	0.9322
AT3G50180			Plant protein of unknown funct...		Potri.016G039866 [exp]	18.49	0.9286

Compare expression of checked genes

Potri.004G171300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.