Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21090 322 / 1e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G02750 187 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 174 / 8e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 166 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 165 / 1e-45 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03540 160 / 3e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09410 161 / 6e-44 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G29760 159 / 4e-43 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 156 / 8e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 155 / 5e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 178 / 6e-50 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 170 / 6e-48 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 173 / 9e-48 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 169 / 5e-47 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 170 / 1e-46 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 166 / 8e-46 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 164 / 9e-45 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G241100 [exp] 159 / 3e-44 AT5G04780 572 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 160 / 1e-43 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005064 [exp] 268 / 9e-87 AT2G21090 513 / 2e-179 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10005987 [exp] 168 / 1e-47 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 171 / 4e-47 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 169 / 4e-47 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 164 / 2e-45 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019213 [exp] 160 / 5e-44 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015414 [exp] 162 / 6e-44 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 161 / 9e-44 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 159 / 3e-43 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 160 / 4e-43 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G171801.1 pacid=42795489 polypeptide=Potri.004G171801.1.p locus=Potri.004G171801 ID=Potri.004G171801.1.v4.1 annot-version=v4.1 ATGCTTTCTGGGTATGCTAAATCAGGCATGACAAATCCAGCTAGGAAGTTGTTTGATAAAATGCCTAAGAGAGAAGTTGTTTCCTGGAATACTATGGTTA TTGGGTTTTATAAGGAGTTAAGGAGATTAGGGATTGGTTATAATGAGTATAGTTTTGCGGGGTTATTGAGGTCATGGGCCGCTGGATTTTTGTGTAAGAT GGTGATTTCAAGCTTGGTTGCTGATGCATACGCAAAATGTGGAGAGATGAGTGATGCGACGAGGTTGTTTGATGGGATGAATGTGAAGGATGTTCTTGCA TGGACAACGATGAATTCAGTCGCGTGGACGGCTTTGATTTCTGGGTATGTTAGGCATGGTTTGGTGTATAAGGCACCTGAGTTGTTTACGAATATGATGG TGTTAGGCATTAGACGGAATCAATTTACTTTTAGTAGCAGTGTTCGCGCTTGTGCCAGTTTAGCTTCGGTTAAGCTTGGTAAGCAAATTGATGGTTACTT GATAAGAAAAAATTTTAGACCTAATACAATTGTTCAAGGTGTTGTCTTGTGGAACCCCATGATTTATGCCTTGGAACAACATGATCACGGTGAAGAAGCT ATTCAGATGTTTGATGACATGGTGGGAAATGGATTAAGACCAGATAAGATAACATTGGTTGATGGGCTCAGGTTACTTGAATCCATGACTGGGGGTAATG GTATTTTTCCCGATCAGGAACATTTTGCTCGCTTGATTGATCTCCTGGGTCAGGCGCGGCATTTTGACAAGTTGATGGGCCAACTTGAGAACATGCACTG CAAGATCAATGAACAGATTTGGAATGCTTTAATTAGCGTTTCTGAACAACATATAGAGTTGGAGCCACAGTCCCCTGCAGCTTATATACTGCTATCAAGT GTATATGCTGAGCTTGGGAGATGGGACCTGGTAGAGAAGATTGAAAATACAGTGCATGCTTTCACTGCCTCGGATAGGTTACACCGTTTGAAAGAAGTAA TATATTCATTCTTGGAACAATTAGTTGGCTGGATGGAAGAGGAAGTTTCATCACCTGTTGCTGAAAGGTAG
AA sequence Show only first row Show all	>Potri.004G171801.1 pacid=42795489 polypeptide=Potri.004G171801.1.p locus=Potri.004G171801 ID=Potri.004G171801.1.v4.1 annot-version=v4.1 MLSGYAKSGMTNPARKLFDKMPKREVVSWNTMVIGFYKELRRLGIGYNEYSFAGLLRSWAAGFLCKMVISSLVADAYAKCGEMSDATRLFDGMNVKDVLA WTTMNSVAWTALISGYVRHGLVYKAPELFTNMMVLGIRRNQFTFSSSVRACASLASVKLGKQIDGYLIRKNFRPNTIVQGVVLWNPMIYALEQHDHGEEA IQMFDDMVGNGLRPDKITLVDGLRLLESMTGGNGIFPDQEHFARLIDLLGQARHFDKLMGQLENMHCKINEQIWNALISVSEQHIELEPQSPAAYILLSS VYAELGRWDLVEKIENTVHAFTASDRLHRLKEVIYSFLEQLVGWMEEEVSSPVAER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21090			Pentatricopeptide repeat (PPR-...		Potri.004G171801 [exp]	0	1
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	8.12	0.8940
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	10.00	0.8929
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	13.22	0.8797
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	16.61	0.8803
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	16.88	0.8470
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.001G062566 [exp]	17.88	0.8501
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	21.63	0.8472
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	21.74	0.8637
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	22.24	0.8161
AT1G04570			Major facilitator superfamily ...		Potri.010G063800 [exp]	22.64	0.8383

Compare expression of checked genes

Potri.004G171801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.