Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38690 558 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT4G34920 491 / 1e-176 PLC-like phosphodiesterases superfamily protein (.1) AT4G34930 441 / 1e-155 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G131600 [exp] 618 / 0 AT4G38690 544 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034483 [exp] 532 / 0 AT4G38690 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10025062 [exp] 522 / 0 AT4G38690 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF00388 [poplar] [flax] PI-PLC-X Phosphatidylinositol-specific phospholipase C, X domain
Representative CDS sequence Show only first row Show all	>Potri.004G172000.1 pacid=42796342 polypeptide=Potri.004G172000.1.p locus=Potri.004G172000 ID=Potri.004G172000.1.v4.1 annot-version=v4.1 ATGGGTTCTCAGGTCTCTAAACAGTTGGAAAAGCGTAAAGCAATCTCAACAGAGAAGAAAGCTCTAGTTGATCTTGAAGGGAACTCTGGAGAAACGTATC CTGGTTCTGATTATCGCCCTTCTGACAGGAAGAATTGGATGGCTGGGCTCAACCCAGAGAAGCTTCACATAAACCAAATTGTATGGCCTGGAACCCATGA TTCTGCTACCAACAAGATTGGCATCCCAATGATTACTCGACCTTTCGCTCAATGCCAGTCTTTGTCCATCTACCGTCAGCTTTGTGTAGGCACCAGAGTT CTTGATGTTAGGGTTCAGGAAGATCGTCGCGTCTGCCATGGAATCTTGACAACATATAGTGTTGATGTTGTTATCCAAGAACTCAAGAAATTCTTGTCAG AAACTCAGTCAGAGATCGTAATTCTTGAGATCAGGACGGAGTTTGGTCATGATGATCCTCCAGAATTTGACAAGTACTTGGAAGAACAGCTTGGAGAATA TCTGATCCATCAGGATGATAATGTTTTTGGCAAGACAATTGCAGAATTGTTGCCAAAGAGGGTAATTTGTGTATGGAAGCCAAGGAAATCACCAGCTCCG AAACACGGAAGCCCGCTGTGGAGCGCCGGATATTTGAAAGATAATTGGATTGACACAGATCTGCCATCAACCAAATTTGAAAGTAACATGAAGCATTTAA GTGAGCAACCACCAGTATCGTCAAGGAAATTCTTTTATAGAGTGGAAAATACTGTTACACCACAAGCAGATAATCCAATTGTGTGTGTTAAACCTGTGAC AAACCGGATTCATGGATATGCTAGGGTGTTCATAACACAGTGCGTCTCAAAGGGGTGTGCTGATAAGTTGCAGATCTTCTCTACAGATTTTATTGATGAG GATTTTGTTGAAGCATGTGTTGGATTAACACAGGCAAGGGTTGAAGGGAAGGCTTAA
AA sequence Show only first row Show all	>Potri.004G172000.1 pacid=42796342 polypeptide=Potri.004G172000.1.p locus=Potri.004G172000 ID=Potri.004G172000.1.v4.1 annot-version=v4.1 MGSQVSKQLEKRKAISTEKKALVDLEGNSGETYPGSDYRPSDRKNWMAGLNPEKLHINQIVWPGTHDSATNKIGIPMITRPFAQCQSLSIYRQLCVGTRV LDVRVQEDRRVCHGILTTYSVDVVIQELKKFLSETQSEIVILEIRTEFGHDDPPEFDKYLEEQLGEYLIHQDDNVFGKTIAELLPKRVICVWKPRKSPAP KHGSPLWSAGYLKDNWIDTDLPSTKFESNMKHLSEQPPVSSRKFFYRVENTVTPQADNPIVCVKPVTNRIHGYARVFITQCVSKGCADKLQIFSTDFIDE DFVEACVGLTQARVEGKA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38690			PLC-like phosphodiesterases su...		Potri.004G172000 [exp]	0	1
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G043400 [exp]	4.24	0.6959
AT1G22040			Galactose oxidase/kelch repeat...		Potri.002G091900 [exp]	6.00	0.6932
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	6.40	0.7260
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	8.94	0.7114
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.014G176500 [exp]	9.00	0.6591
AT3G47160			RING/U-box superfamily protein...		Potri.009G045400 [exp]	9.79	0.6564
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Potri.015G098400 [exp]	18.49	0.6762	CUS3.2
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	19.18	0.6490
AT1G20460			unknown protein		Potri.005G248300 [exp]	21.97	0.6299
AT1G20460			unknown protein		Potri.002G013000 [exp]	24.24	0.6510

Compare expression of checked genes

Potri.004G172000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.